Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00648 ATGGACAGGGAGGCTAACCTTCCGGTCCCGCTCGCACTTGAGAAGAAAGTGAGCCGTCAGACAAACTCAGAAACTACGACCTCGTCTTCCTCCTCCACATCGCCGGACTTCCTTCGGCATGTTCAAGCCGCCTTCAAGCGCCATCAACTACTTGGTGTGACGCAATCAAATAGTTTAAGACCCAGGCGCTTGTTAGTTCCCCAAAGAGAGGTGTCAAGGAACCCACGTTCGGAGGCCAGGCTTGCAGAAAGTGTGAGTCGAGATCATGCAGTGAAGGATTTGATTGAACAGACGAAGAGTACAATGACTATTATTGGTGAAACCCAAGATGAATCAATAACGCGGCCTTCCATGTCAGGCCTGATGACCAAAAGCTTTGATGGAAGTTTCACATCTGATGCCCACAGAGATGAACTTGTACGTGGTGTTGGTTGTCAATCAAGGAGCACATCATCCGCTTTAAATACAGGATCCCAGCATGTTGATGGTCAGAAAATGGTTCGGTTTTCTGTTAAAACCAACAAGATATATCAGGAGATGGATTGGATGGCCGGCCGCCAAGGAGAAGCTTATAGTGTCATCAATCATGGTGAATCTAAGCACCGAAGTTTCCCAAATGCAGAGACTGATATGAACGTGAAGAACAATGGTGGGGTTTCAATGTTGGCACAAAAAACTCCAGCTGTGGAAGAAAAACTCAAGCGATTTGAAGACTTTTTGACTCAACCAGTTAGTCAACCTTCATTTGATCCACCTTGTGCAACCACCACGTCTGTTCACTCAAATTCAGTGCTTATGCTTAATTCAACGACCTATAGCTCTCATTTGCATCAAGAAAGTGGTGGTAGTATTGCTACCGAACCTTTGAGTGACTTTAATGCAAATATTCAACATGAAGCTAAAAGAAGTGTGTTGCCAACATCAGGGTCTTCTCTAAAGGACATTAAGGACGAGGTCAAGAATGGGAAAGGCAATGATGCTCTACATGCTCAGGGTCTTACTGCTAATACAGAAAATGTTAGAAGCAACTATGACATCTCTAAGGATCAGAGGGAAAAGTTAGCTAGAGATAGTGATATTTCGAAACATTCTTTGCAACACAATGATAAATCATATGAAGGCAAATGTTTCATAGGGGACGCCACTGATACAAAGTCCAAGGCCCAAGTACCCAGAAAGGCAGTTTCGGATGTGAATTTGAACCCCTCTGATTCAGAAAAACAAGAAAAAGTGACAAGCAGTGGAGGAAGCAGTGAGGTTCACAAAGTTATCTCATCAGATTGCACAATATATGCACTTAAGAAAATTAAACTAAAAGGTCGTGATTATACCACTGCTTATGGGTTCTGTCAGGAGATTGTGTATTTAAATAAGTTGAAAGGAAAGAATAACATTATACAACTTGTAGATTATGAGGTAACAGATAGGACTTTACTTCAGGAAGTGTTGAATGGCTCCGCGAATCATAAAGATGCTAGGGTTAAGGATGATGGATATATATACATGGTGCTAGAGTATGGCGAAATTGATTTGGCTCACATGCTCTCACAGAAATGGAAGGAAATTGATGGCTCCGATCAGATAAAAGATGAAAATTGGCTTCGATTCTATTGGCAGCAAATTCTTCAAGCTGTAAACACCATACACGAGGAACGCATTGTTCACTCTGATTTGAAGCCCGCAAATTTTCTTCTCGTCAAAGGCTCGTTAAAACTAATTGACTTTGGTATTGCAAAAGCCATAATGAGTGATACTACTCATATCCAAAGGGATTCACAGGTGGGTACCCTGAGTTACATGTCACCCGAGGCATTTATGTGCAATGAGAAAGATGCAAATGGAAACACCATCAAGTGTGGTCGACCATCTGATATTTGGTCCCTTGGCTGCATTCTTTATCAAATGGTATATGGAAGGACCCCCTTCTCCGAGTATAAGACATTCTGGTCGAAGTTTAAGGTCACTACGGACCCAAATCATAAGATTAAATATGAACCCGTTGGCAACCATTGGCTTCTTGATCTTATGAAGAAGTGCCTTGCATGGGACCGCCATGAGAGGTGGAGAATTCCTCAGTTACTTCAACATCCTTTCCTCGTACCCCCAGTCTCCCCACACCTATCCTTATCTCAAGACCAGAGTTCCAAACTTCTGCAACTTATTGCCGAATCTTGTGAAAGTGATCAGGAAGCTTCGTATCTGCGTTCTCAGCTTCAACTTCTCCTCAACTCTGTGCAGCCGATGACATCTCTGTTAATAACTTCTAAAGACAATCAAAGTGAGCTGTTTTCCAAATCGTCAAAGAACTATTTTCTGCTCTACAAGGATGTGGCATCACAGAAGGATGAAAGGTGA 2355 42.55 MDREANLPVPLALEKKVSRQTNSETTTSSSSSTSPDFLRHVQAAFKRHQLLGVTQSNSLRPRRLLVPQREVSRNPRSEARLAESVSRDHAVKDLIEQTKSTMTIIGETQDESITRPSMSGLMTKSFDGSFTSDAHRDELVRGVGCQSRSTSSALNTGSQHVDGQKMVRFSVKTNKIYQEMDWMAGRQGEAYSVINHGESKHRSFPNAETDMNVKNNGGVSMLAQKTPAVEEKLKRFEDFLTQPVSQPSFDPPCATTTSVHSNSVLMLNSTTYSSHLHQESGGSIATEPLSDFNANIQHEAKRSVLPTSGSSLKDIKDEVKNGKGNDALHAQGLTANTENVRSNYDISKDQREKLARDSDISKHSLQHNDKSYEGKCFIGDATDTKSKAQVPRKAVSDVNLNPSDSEKQEKVTSSGGSSEVHKVISSDCTIYALKKIKLKGRDYTTAYGFCQEIVYLNKLKGKNNIIQLVDYEVTDRTLLQEVLNGSANHKDARVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDGSDQIKDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTHIQRDSQVGTLSYMSPEAFMCNEKDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWSKFKVTTDPNHKIKYEPVGNHWLLDLMKKCLAWDRHERWRIPQLLQHPFLVPPVSPHLSLSQDQSSKLLQLIAESCESDQEASYLRSQLQLLLNSVQPMTSLLITSKDNQSELFSKSSKNYFLLYKDVASQKDER 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3574832 3579405 + Carg01507-RA Car15g00648 162485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00648 784 ProSiteProfiles Protein kinase domain profile. 406 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00648 784 MobiDBLite consensus disorder prediction 300 345 - -
Car15g00648 784 Pfam Protein kinase domain 414 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00648 784 MobiDBLite consensus disorder prediction 16 35 - -
Car15g00648 784 MobiDBLite consensus disorder prediction 388 418 - -
Car15g00648 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672|GO:0006468
Car15g00648 784 MobiDBLite consensus disorder prediction 1 35 - -
Car15g00648 784 MobiDBLite consensus disorder prediction 396 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00648 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - csv:101214794 1284.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02260 Car15g00648 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00648 Car-Chr15:3574832 Car02g00816 Car-Chr2:5902584 6.68E-22 dispersed
Car15g00648 Car-Chr15:3574832 Car04g02260 Car-Chr4:18250911 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89393 PF00069 Pkinase 8.60E-52 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00648 Car_Chr15 FPKM 36.041752 38.498783 30.838955 29.785063 25.748188 26.912724 25.602669 29.538536 27.523888 28.257498