Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00650 ATGCTTCCGGCATTCATGGAGGGCTTGCAGAATGCTCTAAACGACCGTGGGTTAACCGTTACTATTCTGCCGGAGAAGGGCCGGAGCCTCTTCACCACCAGGAATTTTCATCCGGGAGAAGAAATAATTAGCCAAGAACCTTATGTTTGCGTCCCCAACAACTCGACAGTTGAGTCCAGATGTGACCGATGTTTCGCATCAATAAACCTCAAGAAATGCTCAGCTTGCAAAGTTGCATGGTATTGCAGCAGTACGTGCCAGAAGTCGGAGTGGAAGTTGCATCGTCTTGAATGTGATGCTCTTGCAAGGCTCGACAAGGATAGGCATAAATCTGTTACTCCATCTATAAGGTTGATTATCAAACTCTTTATCCGAAGAAAACTGCAAAGTGAAAAGGTCATACCTACGACCGCAACAGACAATTATAAATTGGTGGAGGCACTAATAGATCACATGTCTGGCATAGATGAAAAACAATTGGTGTTGTATGCTCAGATGGGAACTCTTGTGAATTTGATCCTGCAGTGGCCAGAAATGAACGTAAAAGAAATAGCACGACACTTCTCCAAGCTTGCATGTAATGCACATACCATATGTGACAGTGAACTTAGACCCTTGGGGACTGGACTATATCCTGTAATCTCCATTATAAACCATAGCTGCTTGCCCAATGCTGTTTTGGTATTCGAGGGAAGATCTGCTGTGGTCCGTGCAGTGCAACATATACCCGCAGGTGCTGAGGTGTCGATCAGTTACATCGAAACTGCTGGAAGCACTATGACTCGGCAGAAAGCTCTTAAAGAAAACTACTTGTTCACTTGCACATGCTCTCGATGCGTTAAAGTTGATCAAGAAGATGAAATCAAAGAAAGTGCAATTTTGGAAGGATACAGGTGCAAAAATGACCATTGTGATGGTTTCCTGCTTCGTAATTCTGATGACACTGGATTCACATGCCAACAATGTGGGCTTGTTCGAAATAAGGAAGAGATAAAAAATATTGCTAGTCAAATAAAATCAATATCAGATGAAGCTTCTACTTCTATGTTTCACCAAAATTGTGGAGAAGCTTTATTTATGTATGAAAAACTTGAGGAACTCCAAAAAATATTATGCCATCCTTGTTCCATTAGTTTGATGCAAACTCGAGAAAAGCTTCTCAAGATTTCGATGGAGCTAGAGAATTGGACAAAAGCTCTACTATACTGTAAACTGACAATTTCAGCTTATCAAAAACTATACCCTGGGATCCATCCATTGCTTGGCTTGCAGTTCTATACTTGTGGGAAATTGGAATGGCTACTTGGGTATACAGAGGATGCTGTAAAATCGTATACCAAGGCATTCGATATACTGCGAATTACTCATGGAACTAATTCAAGTTTCATGAAGGACCTGCTGCTAAAGTTGGAAGAAGCTCGTGCTGAAGCTTCTTATAAACACTCGTCTATGGAGGACGAGTAG 1464 41.67 MLPAFMEGLQNALNDRGLTVTILPEKGRSLFTTRNFHPGEEIISQEPYVCVPNNSTVESRCDRCFASINLKKCSACKVAWYCSSTCQKSEWKLHRLECDALARLDKDRHKSVTPSIRLIIKLFIRRKLQSEKVIPTTATDNYKLVEALIDHMSGIDEKQLVLYAQMGTLVNLILQWPEMNVKEIARHFSKLACNAHTICDSELRPLGTGLYPVISIINHSCLPNAVLVFEGRSAVVRAVQHIPAGAEVSISYIETAGSTMTRQKALKENYLFTCTCSRCVKVDQEDEIKESAILEGYRCKNDHCDGFLLRNSDDTGFTCQQCGLVRNKEEIKNIASQIKSISDEASTSMFHQNCGEALFMYEKLEELQKILCHPCSISLMQTREKLLKISMELENWTKALLYCKLTISAYQKLYPGIHPLLGLQFYTCGKLEWLLGYTEDAVKSYTKAFDILRITHGTNSSFMKDLLLKLEEARAEASYKHSSMEDE 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3580211 3587020 - Carg01505-RA Car15g00650 162487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00650 487 Pfam MYND finger 61 98 IPR002893 -
Car15g00650 487 ProSiteProfiles Zinc finger MYND-type profile. 61 98 IPR002893 -
Car15g00650 487 Pfam SET domain 27 252 IPR001214 GO:0005515
Car15g00650 487 ProSiteProfiles SET domain profile. 16 253 IPR001214 GO:0005515
Car15g00650 487 ProSitePatterns Zinc finger MYND-type signature. 61 98 IPR002893 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00650 K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD [EC:2.1.1.354 2.1.1.357] - csv:101220194 877.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01710 Car-Chr4:9810264 Car15g00650 Car-Chr15:3580211 7.84E-09 dispersed
Car06g00507 Car-Chr6:2841744 Car15g00650 Car-Chr15:3580211 1.83E-08 dispersed
Car15g00650 Car-Chr15:3580211 Car20g00521 Car-Chr20:2870725 3.34E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g318 . . . . . . . . . Cmo15g00718 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0461 . . . . Blo17g00189 . . Bda13g01493 . Bpe14g00371 . Bma02g00234 . . . . . . Car15g00650 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005114 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 8 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4822 PF00856 SET 2.10E-13 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00650 Car_Chr15 FPKM 3.509132 0.0 0.0 3.895564 0.0 0.0 3.706395 1.419899 0.0 0.0