Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00655 ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCTAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA 1137 46.97 MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3627463 3631880 - Carg01500-RA Car15g00655 162492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00655 378 ProSiteProfiles Ribosomal protein S13 family profile. 92 197 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 Hamap 30S ribosomal protein S13 [rpsM]. 88 204 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 MobiDBLite consensus disorder prediction 187 203 - -
Car15g00655 378 ProSitePatterns Ribosomal protein S13 signature. 173 186 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 ProSitePatterns Ribosomal protein S13 signature. 341 354 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 ProSiteProfiles Ribosomal protein S13 family profile. 259 365 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 Hamap 30S ribosomal protein S13 [rpsM]. 256 372 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 Pfam Ribosomal protein S13/S18 93 194 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 Pfam Ribosomal protein S13/S18 258 362 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Car15g00655 378 MobiDBLite consensus disorder prediction 180 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00655 K02952 RP-S13, rpsM; small subunit ribosomal protein S13 - jcu:105638882 379.407
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00859 Car-Chr1:7343382 Car15g00655 Car-Chr15:3627463 8.67E-09 dispersed
Car15g00655 Car-Chr15:3627463 Car04g02368 Car-Chr4:19006698 5.57E-09 transposed
Car15g00655 Car-Chr15:3627463 Car09g01011 Car-Chr9:6742093 5.57E-09 transposed
Car15g00655 Car-Chr15:3627463 Car15g00538 Car-Chr15:2943213 5.57E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g323 . . . . . . . . . Cmo15g00725 . . . . . . . . . . . . . . . . . . . . . Cone4ag1375 Cone7ag1557 . . . . . . Blo17g00193 . . Bda13g01499 . Bpe14g00367 . Bma02g00238 . . . . . . Car15g00655 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010580 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00655 Car_Chr15 FPKM 2.497387 3.517396 0.950193 1.016631 7.843915 6.445943 8.123193 0.223494 0.31874 0.291581