Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00662 ATGACTAGAGACCGATGTCGCCTGGGAAAGAAGATGATGGGTAGGGGTGCGGATGGAGGTTGTGGTACTGAGGAGAGGCCTTGTTTAGTGGCACGAGTGCCGAACAGAATAACGTTGGCCCAAACTCAAACACATGAGGAGAAGTTGTGTACTGTGGACATTGATTATTACGCGCAGGCTCAAAAGGCTTTATGTGAGCGTTCGCCATTTGATGTAGCGGAAGAGACTTCAGCTCCTTGTGTGTCTACTTTGCCCAGTAGGTTGGGTAACTTCTTGAGTAGACATACGGGCGGTAAGAAACGGCAGAGGAAATCCAATTCTGGGGCAGACAAGAAGTCTTCTAGACAAGGTGAAAGGTCGCGTGGCTCCAACATTTGGGTTGAGACAGAGGAATATTTTAGAGACTTGACGCTGTCTGATGTAGACACTTTGCGTGCAGCGTCTTCCTTTAGCGGGTTAGTGTCTAGGAAATGTTTTTCAATTCCCTCGTCAGGAAATGTCCCAGAAGCAAATGTAGGTGGCAGTGAGAATGTTAGTGGCGAGAATACGGATGGGGCCATTGTTAAAGACGAGGTTGAGGATGATCGGTTGTGTCCGGATGTGGGCATGGTTGAAGCCAGTGGCTCACTTCTGGAGGACAAGGGTTGTTCGAATTTGGATTCTTCTTGCGGCTTAGAATGGCTTTTAGGCTGTAGGAATAAGGTGTCTCTAACTTCGGAGAGGCCTTCGAAGAAGCGGAAGCTTCTAGGTGGTGACGCAGGGTTGGAAAAAGTTCTGGTTGCTTCTTCTTGCGATGGAAACTCATCTTTATGCCACTTTTGCTCCAAGGGCGGTACTACCAAAGGGTTAAACCCGTTAGTTACTTGCAGTCGTTGTCATGTGGTGGTTCACAAGAAGTGCTATGGCATTAGAGAGAAAGTCAATGGACCCTGGTTGTGTTCTTGGTGTAAGCAGAGGGATGAAATTAATGAATCCACGAAACCCTGTTTGCTCTGTCCCAGGCAGGGTGGTGCTCTGAAACCTGTACACAAAAACGTTGACAGTGGAGTTTCTGTTGAATTTTCTCATTTATTTTGTAGTCAGTGGATGCCAGAGGTATATATAGAGGACTTGACGCAGATGGAGCCTCTTATGAATCTGGGAGGCATAAAAGAAACCCGGAAAAAGTTAGTATGTAACATATGCAAAGTCAAGTATGGAGCCTGTCTTCGTTGCAGCCATGGAACCTGCAGAACCTCCTTTCATCCAATTTGTGCAAGGGAGGCTAGAAATAGAATGGAGGTCTGGGCAAAATATGGGTGTGATAATGTTGAGCTTCGTGCTTTCTGTTCAAAGCACTCTGACAGTTGGGATAGGAGTAGCGGCCAATGTCCTTCTGAAGCTGTTAACAGTAGCTCATATGTTGTCAGCCACCTTCCAGTAACATTGTCAATTAACAGGCCACAAAAATTAGTAGGGAGAAGGAACATTGATAACCTTTTACTCTGTAAGGAGGCTTCTGATACGAATTCTGGAAAATTGGATGGTGGGGAATCAGAAAATATAGGTTCCACTGATCCCAGTTTGAATGCTGATTGTGTTGATACACACAAGTCTACTGTCCAGGGGGTTGAGGATGTTAACCCACTTGACTCCCTTAAACTTGCATCAATTATGAAAAAGTTGATTGATCAAGGAAAAGTGAACGCTAAAGATGTAGCCTCAGAAATTGGCATACCGCCTGATTTATTATGTGCAAAACTTGCTGCTGCCAACCTTGTCCCCGACTTGAAATCCAAAATTGTCCGATGGCTAAGAAGTCATGCTTATATTGGCACCTTGCAGAGAAATTTGAGAGTCAAACTCAAGTCGGCTGTTGCTAAAGCTGTTGATGGATCTGCTGATCGTTCAGACTCATTGTCAGTACCTGATTCTGATAATTCAGACCTTATTGCTAATAAGATGGTTACACTTCGAAGAAAAACTAAAAGCAATATTAGCCATTTGAAGAGTGACGAAATCAAATCTTCATCTGAAGAAACTTTAGGTGGCCATTGTCTAGTTATGCAAAGTGATACCTTGGACCAGCAAGCTTGTGAAGAACAAGGTGATTCAAATAAGGAATGCATCCAAGATGCTGGTGAGAAGCATTTAAACGAGCATGATAGTTCTCAAGATACTCCAAGGAATTTGCCAAATGATGTAGAAGGTGATTTCTTGGAGTGTTCTGTTTCTGGCCATAATTCTTCAGTAAGTGCAGTTCATGGAAAGGCTGGAGAGTCCCCTAATTCTTATTTTCATCCATATGTCCAAGAGAAAATGGCACATATGTTGGATGCAAAGCTTCTAAATTTGTCAGAAGGAGAGATGTCATGGCAAGCATCTTCCAGTGCTGGCGTTTGCTGTGGTCACCACAGCCAGCATTTTGACTGCAATGGCACGAGTTACAAATCTGGTGGATTTAATCCAAAGCAGCTAGTCAATAAAAAAATAGGTGGAATCATAAAGTTGTCTCCAGAAGATGAAATTGAAGGAGAAATTATATTTTATCAGCTCAGATTACTTGCAAATGCAGTTTCAAGAAAGCGGTTCACTGACTATTTAATTTGTAACGTTGTTAAGAGTCTTCCAAAGGAGATAAATGAAGCACGAAGTACTAGATGGGATGCTGTTCTTATTAATCAGTATTTTGGTGAGCTTAGAGAAGCAAAGAAACGAGGTAAGAAAGAGAGAAGGCATAAAGAAGCACAGGCTGTACTAGCTGCTGCAACGGCTGCTGCTGCTGCCTCTTCTAGGATGTCATCATTCAGAAAGGATGTATACGAAGAATCTGCTCATAGAGAGTTGATGCCTCGTGCAAAAGAAACACTTACTAAGGTTGCTCTCCCAAAAACTTCATTAGAGTCGGATTTCTGTAAAGAACATGCTAGATCCTGTGACATCTGCAGGCGGCCAGAGACAATGTTAAAGCCAATTTTAGTCTGCGCAAGCTGCAAGGTTTCAGTACATCTGGATTGCTATCGGACTGTTAAAGAGTCCTCAGGTCCATGGTATTGTGAGTTATGTGAAGAATTGGCAGTATCAAGAGGGTCTGGAACTCCAGTAGTCAATTTTTGGGAGAAATCATATTTTGTTGCAGAATGTGGTCTATGTGGTGGCACCACAGGTGCATTCAGGAAATCATCTGACGGCCAGTGGGTTCATGCCGTATGTGCAGAGTGGGTCTTCGAATCAACTTATAAAAGAGGACAAGCAAATCCTGTGGGAGGAATGTGTAATTATGGTCATTGTCAGACCACTTTTCATCCCTTATGCGCTAGAAGTGCTGGATGTTACATGACTGTAAAGACTTCGGGTGGTAAGTTGCAGCACAGAGCATACTGTGAAAAGCATAGCTCAGAGCAGAGAGCAAAGGCTGAGAACCAAACACATGGAATCGAGGAATTGAATAGAGTCAAGCAAATTAGGGTTGAACTTGAGAGGCTACGCCTACTCTGCGAGAGAATCATCAAGCGTGAGAAGATCAAGAGGGACCTGGTTCTGTGTTCACATGATGTTCTTGCTTTTAAAAGAGACCATGTAGCACGATCCGTACTAGTTCACTCTCCTTTCTTCCTACCTGAAGTTAGTTCTGAATCAGCTACCACATCATTAAAGGGGCACGTGGAAGATTTAAAATCGTGCAGCGAAGCTGTGCAGAGATCAGATGATTTAACTGTGGACAGCACAGTTTCCATCAAGCACTGGAACAAAGTACCGTTGTCTTTGGACACTGAACAAAAGACGGACGACGATAGTTCTACATCTCAGAACCCATTCCCCCAAAAATTTGTAGACAGGGGTCAGTTTGCCGGGAAGCAAATACCTCAGAGATCTTCAACTTCTACATCACGTAATCTTGTAGATGTTAGAGGATTGAGGTTCAAGTCTAGAAAGCATGCCGAGACATTTCAGAAAGAGCTGGTAATGACGTCCGACCAAGCATCAATGAAGAATTCTCTTTTACCTAAGCAGTACCTGTATGTTCCTGCTGATGTCCTCGCCAAGGAGAAACAGGTCAACCAGGAAACAGGTTCTGCCGAGCCACCAAAATGCGACAGGTAG 4083 43.74 MTRDRCRLGKKMMGRGADGGCGTEERPCLVARVPNRITLAQTQTHEEKLCTVDIDYYAQAQKALCERSPFDVAEETSAPCVSTLPSRLGNFLSRHTGGKKRQRKSNSGADKKSSRQGERSRGSNIWVETEEYFRDLTLSDVDTLRAASSFSGLVSRKCFSIPSSGNVPEANVGGSENVSGENTDGAIVKDEVEDDRLCPDVGMVEASGSLLEDKGCSNLDSSCGLEWLLGCRNKVSLTSERPSKKRKLLGGDAGLEKVLVASSCDGNSSLCHFCSKGGTTKGLNPLVTCSRCHVVVHKKCYGIREKVNGPWLCSWCKQRDEINESTKPCLLCPRQGGALKPVHKNVDSGVSVEFSHLFCSQWMPEVYIEDLTQMEPLMNLGGIKETRKKLVCNICKVKYGACLRCSHGTCRTSFHPICAREARNRMEVWAKYGCDNVELRAFCSKHSDSWDRSSGQCPSEAVNSSSYVVSHLPVTLSINRPQKLVGRRNIDNLLLCKEASDTNSGKLDGGESENIGSTDPSLNADCVDTHKSTVQGVEDVNPLDSLKLASIMKKLIDQGKVNAKDVASEIGIPPDLLCAKLAAANLVPDLKSKIVRWLRSHAYIGTLQRNLRVKLKSAVAKAVDGSADRSDSLSVPDSDNSDLIANKMVTLRRKTKSNISHLKSDEIKSSSEETLGGHCLVMQSDTLDQQACEEQGDSNKECIQDAGEKHLNEHDSSQDTPRNLPNDVEGDFLECSVSGHNSSVSAVHGKAGESPNSYFHPYVQEKMAHMLDAKLLNLSEGEMSWQASSSAGVCCGHHSQHFDCNGTSYKSGGFNPKQLVNKKIGGIIKLSPEDEIEGEIIFYQLRLLANAVSRKRFTDYLICNVVKSLPKEINEARSTRWDAVLINQYFGELREAKKRGKKERRHKEAQAVLAAATAAAAASSRMSSFRKDVYEESAHRELMPRAKETLTKVALPKTSLESDFCKEHARSCDICRRPETMLKPILVCASCKVSVHLDCYRTVKESSGPWYCELCEELAVSRGSGTPVVNFWEKSYFVAECGLCGGTTGAFRKSSDGQWVHAVCAEWVFESTYKRGQANPVGGMCNYGHCQTTFHPLCARSAGCYMTVKTSGGKLQHRAYCEKHSSEQRAKAENQTHGIEELNRVKQIRVELERLRLLCERIIKREKIKRDLVLCSHDVLAFKRDHVARSVLVHSPFFLPEVSSESATTSLKGHVEDLKSCSEAVQRSDDLTVDSTVSIKHWNKVPLSLDTEQKTDDDSSTSQNPFPQKFVDRGQFAGKQIPQRSSTSTSRNLVDVRGLRFKSRKHAETFQKELVMTSDQASMKNSLLPKQYLYVPADVLAKEKQVNQETGSAEPPKCDR 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3683951 3701550 + Carg01493-RA Car15g00662 162499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00662 1360 ProSiteProfiles Extended PHD (ePHD) domain profile. 326 447 IPR034732 -
Car15g00662 1360 ProSitePatterns Zinc finger PHD-type signature. 972 1015 IPR019786 -
Car15g00662 1360 ProSitePatterns Zinc finger PHD-type signature. 271 316 IPR019786 -
Car15g00662 1360 Coils Coil 1145 1165 - -
Car15g00662 1360 Pfam PHD-finger 284 317 - -
Car15g00662 1360 Pfam PHD-finger 984 1016 - -
Car15g00662 1360 MobiDBLite consensus disorder prediction 1250 1269 - -
Car15g00662 1360 Pfam PHD-zinc-finger like domain 328 446 - -
Car15g00662 1360 MobiDBLite consensus disorder prediction 103 118 - -
Car15g00662 1360 MobiDBLite consensus disorder prediction 91 122 - -
Car15g00662 1360 ProSiteProfiles Zinc finger PHD-type profile. 969 1018 IPR019787 -
Car15g00662 1360 ProSiteProfiles Zinc finger PHD-type profile. 268 319 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00662 - - - bhj:120067860 2299.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02243 Car15g00662 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00662 Car-Chr15:3683951 Car18g01226 Car-Chr18:11794729 4.11E-07 dispersed
Car15g00662 Car-Chr15:3683951 Car04g02243 Car-Chr4:18156284 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4823 PF13832 zf-HC5HC2H_2 1.50E-21 CL0390 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00662 Car_Chr15 FPKM 5.159167 5.420733 0.178806 0.387045 0.489884 0.586222 0.358151 0.628488 0.682668 0.610072