Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00679 AAAAAGAAAAAGAAAAAGAAAAAATCTCTTTCTTGTTCTCTTTCCCACTGTTGCCATATTCGTGAAGATCTCCGTGAAAATCCGAACTGCGCTGTGTCATCGTTCAAACCGTTTCTCTCATTTTCCTCGCGATTCCATCTGTACGCACAATCAAAAGTTTCAAGCGGCAGATTCTGCACGGAAGTAGAAGAAGGTGCGGTTCTGGTGAAGAGAGGAGGACGGAAGGCGGAAGGCGGAAGGCGGTGGATGGATTCGAATGAGGAGGAATATAATGTGGAAACCGTTCGCGAACGGATCGCGTCGTCGCGAGCGAGCCGACTGGACCTGGTTCAGAAAGAGTTGAGTATGCAATCGGGTCGCAGAAGATTTAGCCTCGAAAATATCATCAATGGCATTAAAGGCCTCATTATCCATCCTGACAGCAGGTGGTATCGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTATTCTTCCTTCTTCACACCCATGGAATTCGCGTTCTTCAGGGGATTACCAGATAATCTATTTATACTTGACATTGTTGGACAGATTGCTTTCCTCGTTGACATTGTTTTCCAGTTCTTCCTTGCGTACAGAGATAGTCAGACATACCTAATGGTCTATAAGCACACTCCAATAGCACTCAAGTACTTGAAGTCCACTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGACCTCATTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATGCCTTCTATGGATAAGGCTATTTCGGGTGCGGAAAGTCACCGATTTTTTCCAGAGGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTGAAGCTCATTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACCACTCTTCCTCCTGCCGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTGGGGGACTACAGTTACTCACATTTCAGGGATATTGATCTATGGAAACGATACACCACATCTTTATACTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACCTGAGGGAAATGATATTCGTTATGATTTATGTATCATTTGACATGGTTCTCGGTGCTTACTTGATTGGTAACATGACTGCGTTGATTGTAAAAGGGTCCAAGACGGTGAAATTCAGGGATAAAATGACAGATATAATGAAATACATGAACAGAAATAGACTTAGCAGGGACATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTATACTGAAGCTTCTGTTCTACAGGACATCCCAATATCGATCCGTGCTAAGAATGTCGCTATCTTTAAAGGATGCTCTCCAGAGTTTATCAACCAAATAGTTATTAGACTGCATGAAGAGTTCTTTCTGCCTGGAGAGGTGATAATGGAACCAGGAAATGTGGTCGATCAACTTTATTTTGTCTCTCATGGTGTGCTGGAGGAAGTGGGCATAGCACAAGATGGTTCAGAAGAAACCATAGATTTACTAGAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCCTATACAGTTCGAGTGTGTGAATTATGTAGACTACTACGCCTTGACAAGCAGTCCTTCACAAATATCCTTGACATATACTTCTACGACGGCAGGAAAATCTTGAACAATCTTCTTGAGGGAAGAGAAACGAGCCTCCGAATTAAGCAAATGGAATCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTGAAGGTGAACAGTGCCGCATATCATGGAGATCTGTACCAATTGAAAGGTCTGGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCACCTTTGATGATATCGAAGAACTTAGTTGTTTTTCCACAGCATCTTGCAGCATCCAGAGGATTCGATGATATGGTAGTTTTCCTAATTCAGGAAGGAGTAGACATTGATCTTACAGATAATTTTGGCAATACGCCATTGATGGAAGCCATCAAGAATGGGAACGATCATGTTGCTGAGTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTCTGTGCAGCAGTTTCAAGGGGTGATGCAGATCTTATTAAGAGATTATTGCTCTATGGCATTGACCCCAACACCAAAGATTACGATTTCAGAACTCCGCTACATATAGCTGCCTCTTCTGGGCTAACTTTGATGGCAAAGTTGCTTTTAGAATATGGGGGTAGGGCAAAAGATTCTCAGTTATTAGAATCCTCTTATTCCTCTAAAAAATTCTCAGACAGAAAATACTCGAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTGAAGAAAATAGAAAGCCTGGAATCGTCCTATGGGTTCCATACACCATTGAAGAGCTCATCAAAGTATCATCAGATCAGCTTCTAGTTTCAGGTGAATGTTGTCTATTATCAGAAGACGGAGGTAAAATTCTTGATATCCATATGGTTGATGAAGGTCAAAAGCTGTATCTAGTTCCTGAAACT 2583 41.97 KKKKKKKKSLSCSLSHCCHIREDLRENPNCAVSSFKPFLSFSSRFHLYAQSKVSSGRFCTEVEEGAVLVKRGGRKAEGGRRWMDSNEEEYNVETVRERIASSRASRLDLVQKELSMQSGRRRFSLENIINGIKGLIIHPDSRWYRAWTKFILIWAVYSSFFTPMEFAFFRGLPDNLFILDIVGQIAFLVDIVFQFFLAYRDSQTYLMVYKHTPIALKYLKSTFVTDFLSCMPWDLIYKACGKREEVRCLLWIRLFRVRKVTDFFQRMEKDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPAEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDIMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKNVAIFKGCSPEFINQIVIRLHEEFFLPGEVIMEPGNVVDQLYFVSHGVLEEVGIAQDGSEETIDLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGRETSLRIKQMESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLMISKNLVVFPQHLAASRGFDDMVVFLIQEGVDIDLTDNFGNTPLMEAIKNGNDHVAELLSKEGASLKVENAGSFLCAAVSRGDADLIKRLLLYGIDPNTKDYDFRTPLHIAASSGLTLMAKLLLEYGGRAKDSQLLESSYSSKKFSDRKYSKKCTVFPFHPWDPEENRKPGIVLWVPYTIEELIKVSSDQLLVSGECCLLSEDGGKILDIHMVDEGQKLYLVPET 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3778794 3785265 - Carg01476-RA Car15g00679 162516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00679 861 Pfam Cyclic nucleotide-binding domain 474 558 IPR000595 -
Car15g00679 861 ProSiteProfiles Ankyrin repeat profile. 706 738 IPR002110 GO:0005515
Car15g00679 861 Pfam Ion transport protein 145 390 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car15g00679 861 Pfam KHA, dimerisation domain of potassium ion channel 788 857 IPR021789 -
Car15g00679 861 ProSiteProfiles Ankyrin repeat profile. 675 707 IPR002110 GO:0005515
Car15g00679 861 Pfam Ankyrin repeats (3 copies) 606 704 IPR002110 GO:0005515
Car15g00679 861 ProSiteProfiles Ankyrin repeat region circular profile. 739 763 - -
Car15g00679 861 ProSiteProfiles Ankyrin repeat region circular profile. 646 674 - -
Car15g00679 861 Pfam Ankyrin repeats (many copies) 711 759 IPR002110 GO:0005515
Car15g00679 861 ProSiteProfiles Ankyrin repeat profile. 646 674 IPR002110 GO:0005515
Car15g00679 861 ProSiteProfiles Ankyrin repeat profile. 739 763 IPR002110 GO:0005515
Car15g00679 861 ProSiteProfiles KHA domain profile. 789 861 IPR021789 -
Car15g00679 861 ProSiteProfiles Ankyrin repeat region circular profile. 675 706 - -
Car15g00679 861 ProSiteProfiles cAMP/cGMP binding motif profile. 454 574 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00769 Car-Chr6:5866479 Car15g00679 Car-Chr15:3778794 2.80E-07 dispersed
Car15g00679 Car-Chr15:3778794 Car11g00432 Car-Chr11:2414856 5.69E-111 dispersed
Car15g00679 Car-Chr15:3778794 Car04g02227 Car-Chr4:18066473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00679 K21867 - csv:101210912 1328.54