Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00712 ATGGTTTTGTCCAAGACTGTTTCTCAGACGGATGTCTCCGTCCACTCTACCTTCGCTTCTCGATACGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAGAATTCGATCCCTAAGGAGGCTGCGTTTCAGATCATTAATGATGAGCTCATGCTCGATGGAAACCCTAGGCTGAATTTGGCATCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCTATTAACAAGAATTACGTTGATATGGATGAGTATCCCGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCGTTGGGGGAATCCGAGACGGCGGTGGGAGTCGGAACCGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAAAATGAAGGCTGCAGGCAAGCCCTATGACAACCCCAACATCGTCACTGGAGCCAATGTCCAGGTATGCTGGGAGAAATTCGCAAGGTACTTCGAGGTAGAACTGAAGGAAGTGAAATTGAGCGAAGGTTACTACGTGATGGATCCACAGAAAGCTGTGGAGTTGGTTGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCCACACTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAATGATCTCTTAATCGAGAAGAACAAGGAAACTGGATGGGATACCCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTAGAATGGGATTTTAGGCTGCCCCTGGTTAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGGATTGGTTGGGCTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGATCTAGCCAAGTTATTGCTCAGTATTACCAAATGATCCGGTTGGGTTATGAGGGATACCAAAACGTGATGGAAAATTGCAGAGAGAACATGTTGGTTCTAAAGGAAGGACTCGAAAAAACGGGTCGTTTCAACATCGTGTCGAAGGACAATGGAGTCCCACTTGTGGCCTTCTCCTTGAAAGATAGCAGTCGTCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGTTGGATTGTGCCTGCCTACACCATGCCTCCAGATGCACAACACATAACAGTCCTTAGAGTTGTGATCCGAGAAGACTTTTCTCGCACACTTGCTGAGCGTCTAGTGGCAGATATTGAGAAAACGATGCACGAGCTCGACATCCTCCCGTCGAAGGCCGATATCAAGAACACGGTGGCGAAGAAGAGCGAACTCGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGAACAAGAAGAAGACTAATGGAGTTTGTTAA 1464 46.93 MVLSKTVSQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQMIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDSSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKTMHELDILPSKADIKNTVAKKSELETQREITTVWRKFVMNKKKTNGVC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3952208 3957153 - Carg01443-RA Car15g00712 162549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00712 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Car15g00712 487 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Car15g00712 487 CDD DOPA_deC_like 59 439 - -
Car15g00712 487 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Car15g00712 487 Gene3D - 361 448 - -
Car15g00712 487 Gene3D - 66 360 IPR015421 GO:0003824
Car15g00712 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
Car15g00712 487 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Car15g00712 487 Gene3D - 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00690 Car-Chr1:4126007 Car15g00712 Car-Chr15:3952208 0 dispersed
Car04g02093 Car-Chr4:17086712 Car15g00712 Car-Chr15:3952208 0 dispersed
Car04g02352 Car-Chr4:18921179 Car15g00712 Car-Chr15:3952208 1.31E-07 dispersed
Car08g00150 Car-Chr8:898358 Car15g00712 Car-Chr15:3952208 1.28E-14 dispersed
Car15g00712 Car-Chr15:3952208 Car15g00821 Car-Chr15:4669021 0 dispersed
Car15g00712 Car-Chr15:3952208 Car04g02196 Car-Chr4:17872717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00712 K01580 - csv:101216119 934.865