Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00728 ATGCATGCAGATGTGGAAACGGATGAAGTGTATGCCCAGATGACATTACAGCCGCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCGAGTGATACAAGCACCCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGTCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAGTATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGACGAGTCAGCAGCTGGGGAGAGACAGCCAAGGGTATCGTTGTGGGAAATTGAGCCTTTAACTACGTTTCCTATGTATCCGTCTCTTTTTCCACTTCGGTTGAAACGTCCATGGCATCCTGGAGTCTCCTCTGTTCATGATAACAGAGATGATGCTTCTAATGGCTTAATGTGGCTTCGGGGAGGAGTCGGGGATCAAGGTCTACACTCACTGAATTTGCAATCCATGGGCTCACTGCCGTGGTTGCAGCAGAGACTCGATTCTCCCATGTTCGGAAATGATCATAATCAGCAGTATCAAGCCATGTTAGCTGCTGGAATGCCGAACCTTGGAGGCGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTTCAGACACCAAGCCAAGTTATGGCAGAGAATATACCCCAACACATTCTCCAGCAAACTCCACAAAATCAATCAGAGGATATTCCAAACCAGCAGCAGCGTACTTATCATGAAACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGAAAATTCAAATGTGCCATCACCCCCATTTCCCAGGACAGAGCTTATGGATTCGAACACAAATTACTCCGAATCCATGATCTCTAGAAGAAATATACTTGCTTCATCGTGTGCTGAAGGGACGGGAAATCTTTCCAATATCTATAGAAGTGGGCAGTCGATCCTAACCGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATCCACAGGTTGATGCTCACTCGAACTCGATGACATTTCCTCCACCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCGTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCAATGGGAGATTCTGGATTTCAGAATTCTATGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCGGGGCAAGTTGATCCATTGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGTTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGGATCGAGGGACAGTTGGTAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCTGGTATATCAAGATACTCTCTCCCCAGGACTTTCAGAAACTAGGGGTTCAGGCAATTGAGTCCTTCAACCCCGTCGGTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGAAAATGTTTCAGGGCTTCCGTCTGTCGGTTCGCTAGAATATTGA 2280 45.48 MHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESAAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGDQGLHSLNLQSMGSLPWLQQRLDSPMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQQQQQLVQQSMPQNILQTPSQVMAENIPQHILQQTPQNQSEDIPNQQQRTYHETLQVQSNQFHQGENSNVPSPPFPRTELMDSNTNYSESMISRRNILASSCAEGTGNLSNIYRSGQSILTEQLPQQSPVSKNAHPQVDAHSNSMTFPPPFSGRDSILELGNCNSDSPSRTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPMGDSGFQNSMYSCVQDSSELLHSSGQVDPLNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLVDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGVQAIESFNPVGGQRLTSGGNEAENVSGLPSVGSLEY 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4049286 4065107 + Carg01427-RA Car15g00728 162565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00728 759 MobiDBLite consensus disorder prediction 738 759 - -
Car15g00728 759 Pfam Auxin response factor 170 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car15g00728 759 MobiDBLite consensus disorder prediction 520 546 - -
Car15g00728 759 MobiDBLite consensus disorder prediction 520 549 - -
Car15g00728 759 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Car15g00728 759 Pfam B3 DNA binding domain 44 145 IPR003340 GO:0003677
Car15g00728 759 ProSiteProfiles PB1 domain profile. 634 719 IPR000270 GO:0005515
Car15g00728 759 Pfam AUX/IAA family 631 718 IPR033389 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00401 Car-Chr13:6546260 Car15g00728 Car-Chr15:4049286 0 dispersed
Car15g00728 Car-Chr15:4049286 Car18g00462 Car-Chr18:2973511 0 dispersed
Car15g00728 Car-Chr15:4049286 Car04g02184 Car-Chr4:17745726 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4829 PF02309 AUX_IAA 8.20E-08 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00728 - - csv:101208098 1413.67