Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00731 ATGCCCTTTTTGGACTACCAACCTCCTCCTCCGCCGCCGCCGCCGCCGCCTCCACGCGATCTCGCCGCCGCTGTTCAGGCTGCTTCTCTCCACCGCAAGAAGCGGATGTCGAGACACCGCCGCCGATCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTGCCCTTCTGCCTCCGCCGCCACGGGTGATTGATCCAAGGAGGCTCAAGTTTCTTTTTGAGAAAGAGCTTAAGAACAGTGATGTTAGCTCTCTAAGAAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTCCCAGCTTTGGACTCCAAAGAAGGAATTATAATTACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCGAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTTGTCAATGCTCATGGCTTACAACTAGGAGATTTCATCATGGTTTACCAAGATTATGAAAACCTCAACTATGTGATTCAAGCAAAAAAGGCTTCTGATCAAGAAATGTATACCGGTATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGCCTAGTCCAACGATGGATGTGTCGTCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAGTGACTAACTACTCGAGAATGGGAGGTCTCGAAGGGTTTGGATCGGTCGAGAACTTGTCTCTTGACGAGTTCTACTAA 801 46.32 MPFLDYQPPPPPPPPPPPRDLAAAVQAASLHRKKRMSRHRRRSSSNLHFSFPSSSAALLPPPPRVIDPRRLKFLFEKELKNSDVSSLRRMILPKKAAETHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVPSPTMDVSSFIYDTSSAFDNDSTFDFMSGSVTNYSRMGGLEGFGSVENLSLDEFY 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4079284 4080853 + Carg01424-RA Car15g00731 162568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00731 266 ProSiteProfiles B3 DNA-binding domain profile. 75 177 IPR003340 GO:0003677
Car15g00731 266 SUPERFAMILY DNA-binding pseudobarrel domain 73 171 IPR015300 -
Car15g00731 266 MobiDBLite consensus disorder prediction 31 45 - -
Car15g00731 266 Pfam B3 DNA binding domain 75 173 IPR003340 GO:0003677
Car15g00731 266 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 28 266 - -
Car15g00731 266 SUPERFAMILY Formin homology 2 domain (FH2 domain) 8 18 - -
Car15g00731 266 MobiDBLite consensus disorder prediction 1 21 - -
Car15g00731 266 Gene3D - 71 185 IPR015300 -
Car15g00731 266 MobiDBLite consensus disorder prediction 1 48 - -
Car15g00731 266 CDD B3_DNA 73 175 IPR003340 GO:0003677
Car15g00731 266 SMART B3_2 75 177 IPR003340 GO:0003677
Car15g00731 266 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 28 266 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00165 Car-Chr6:1001573 Car15g00731 Car-Chr15:4079284 6.02E-18 dispersed
Car07g00227 Car-Chr7:1253909 Car15g00731 Car-Chr15:4079284 1.20E-19 dispersed
Car08g00053 Car-Chr8:324844 Car15g00731 Car-Chr15:4079284 5.59E-35 dispersed
Car15g00731 Car-Chr15:4079284 Car17g01158 Car-Chr17:8934830 8.32E-38 dispersed
Car15g00731 Car-Chr15:4079284 Car04g02179 Car-Chr4:17723333 2.41E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4831 PF02362 B3 9.50E-18 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00731 - - csv:101222512 348.206