Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00738 ATGTCTGGTTCTGACGGCGTCAACTGCAACAATGGCGCCATTATTGATCATTCTCAGACTAACAACAATGGCGGTTTGGCCGTCAAAAAACCTCCGTCCAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCGATCATTTGTGCTGCTCGGGTTTTCCAACTTACCCGCGAGTTGGGCCACAAATCCGACGGTCAAACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCTTCGATTATTGCTGCCACTGGCACCGGCACTACTCCGGCTAGCTTCTCCACCATTTCGGCTTCACTACGCGGTGGTTCTGCTGCTACTTCCTCTCTTGACCATAAGCCGCTTTTGGCTCCGGCGCCGTTCATTCTTGGCAAGCGCGTTAGAACGGACGACGATGGAGATAATAAAGACGACGGTAGCGGTGGCGGTGGCGGTGGTGGTGGCGTTTCGGTTGGCTCTACTGTGAGTTCGTTTATGAGTACGGCTGCCGCGGGTGGATATTGGGCGATTCCTACGAGGCCGGATTTCGGACAGGTGTGGAGCTTTGCAGCAGCAGCGGCGGCGGCTCCGGAGATGGTGATTCAACCAACCGCGGTTTCTCACCCGGCGTCGTTGTTCGTTCAACAGCAATCGATGGGAGAAGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCCGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCACCGTTGA 762 56.3 MSGSDGVNCNNGAIIDHSQTNNNGGLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGSAATSSLDHKPLLAPAPFILGKRVRTDDDGDNKDDGSGGGGGGGGVSVGSTVSSFMSTAAAGGYWAIPTRPDFGQVWSFAAAAAAAPEMVIQPTAVSHPASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4134034 4134795 + Carg01417-RA Car15g00738 162575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00738 253 MobiDBLite consensus disorder prediction 130 152 - -
Car15g00738 253 MobiDBLite consensus disorder prediction 30 45 - -
Car15g00738 253 MobiDBLite consensus disorder prediction 1 27 - -
Car15g00738 253 Pfam TCP family transcription factor 33 119 IPR017887 -
Car15g00738 253 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Car15g00738 253 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00738 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101214586 349.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00738 Car-Chr15:4134034 Car18g00741 Car-Chr18:8490719 7.70E-84 dispersed
Car15g00738 Car-Chr15:4134034 Car04g02171 Car-Chr4:17624847 2.37E-135 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car15g00738 . 31 253 TCP Transcription Factor Family AT5G23280 63.5 1.8e-65 246.5
Car04g02171 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 2.6e-64 242.7
Car04g01351 . 36 250 TCP Transcription Factor Family AT5G23280 61.4 9.7e-64 240.7
Car18g00741 . 33 230 TCP Transcription Factor Family AT5G23280 58.5 9.4e-59 224.2
Car17g00004 . 65 337 TCP Transcription Factor Family AT2G45680 52.2 7.9e-59 224.9
Car18g01068 CCT,ECH 58 148 TCP Transcription Factor Family AT3G47620 92.3 4.5e-41 166.4
Car04g01690 CCT,ECH 62 156 TCP Transcription Factor Family AT3G47620 88.7 5.0e-40 162.9
Car13g00957 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.3e-39 160.2
Car04g01863 . 140 222 TCP Transcription Factor Family AT3G47620 90.4 1.5e-36 151.4
Car04g01863 . 140 232 TCP Transcription Factor Family AT1G69690 82.8 1.7e-36 150.6
Car14g00666 . 1 319 TCP Transcription Factor Family AT3G27010 57.1 5.7e-61 231.9
Car11g01298 . 38 276 TCP Transcription Factor Family AT3G27010 56.7 6.7e-54 208.4
Car17g01312 . 42 259 TCP Transcription Factor Family AT3G27010 53.2 5.5e-48 188.7
Car15g00738 . 1 252 TCP Transcription Factor Family AT5G08330 60.9 2.4e-64 242.7
Car04g02171 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 7.9e-63 237.7
Car04g01351 . 8 248 TCP Transcription Factor Family AT5G08330 55.2 1.3e-60 230.3
Car18g00741 . 10 228 TCP Transcription Factor Family AT5G08330 57.4 3.7e-60 228.8
Car11g00191 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 58.0 4.1e-39 159.5
Car20g00876 . 39 150 TCP Transcription Factor Family AT3G02150 66.4 2.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4833 PF03634 TCP 2.60E-32 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00738 Car_Chr15 FPKM 83.435287 87.135597 106.265854 97.525414 96.048546 113.552483 97.235764 119.860237 126.736687 120.119225