Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00796 ATGAACGGGAAGGATGAATTTGAAGATGAGAGTAGGAGGAGTGATCCTATGAGTATCACCTCCGGCTGGCAATTTGCTGGTGCTGTTAGCAATGAGGATCTAAGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTCACTCCAACCCTTATGAACTCGGGATTCTGCAGCAGTTTTAATGAACAAAACAGCATAGTTACTGGAGAAGGTCTGAATTCTTTGAGATCTAATGGTGTGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGGAAATGTTCATGGATTTCCAGCTAATTTATCTCAACTTCCAGCTGATTCAGCGTTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAACAGCGGAGTTTTTGGGGCTTCGCCGCCGCCTGTCGGTGCTTTCGATATTTCAAACTCCATAGGCATTCATTCTAGACAAGAAGTTATGTCCAGAAATAGAGCCTCCAAGGATGGTTCTTTTCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGACAGAATGTGAAATGTCTCAAGCCAGAGGTAAAGAATCCGATGAGGCCGGGTTCAGTGGCGGTCATGGCGAGCGATGCGTGTTGGAAGGTACTATCACAGAACCATCTACGGATGAACTATGCTTAAGGAAAAGGAAAAGGGATGAACAGAATATAGAACTTGGACAAGTCAAAGAAGCTCCCCAACAAATTAACCAAACTGCCAAGAATGGCGCATCGAATCAGCAGAAGGGAACACAAAACCCGAGTTCTACTACGAATAAGCCTGCTGAAAAGCAAGGGAAACAAGATTCTCAGCCGACGGATGCTCCCAAAGAAGAGTATATTCATGTTCGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGACTCCTTCAGGACCTCGTGCCCGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCGTTGCAACGACAAGTCGAGTTCCTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATTTCAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTATTTAGTTTTCCTCCTGATATGCCTATGCCTTACCTCCCGCAACATCCGTCTCATCTAGGACTTATTCCGCCTGGTCTTCCAAACATGGCGAGCTCTCCGGACCTGCTACGAAGAACGATAAATTCCCAGCTAACTTCACTCGTTGGTGGATTCAAGGAGCCAGTTCAGCTTTTGCAGATACCGAACGGGTGGGAGAACGAACTCCACAATGCTGTTCCAATGAGCTTTGATGTCGCTGCGCCTACAAGTGGCCAAGATGTAGATGGTACTATTTGTTCAAGTTCCACTCCACAATGCAACACCAGAGCACAACTCTAA 1476 45.05 MNGKDEFEDESRRSDPMSITSGWQFAGAVSNEDLSVSSCPSTSMSNLFTPTLMNSGFCSSFNEQNSIVTGEGLNSLRSNGVDWNQQNPWMKGVFSGNVHGFPANLSQLPADSAFIERAARFSCFNSGVFGASPPPVGAFDISNSIGIHSRQEVMSRNRASKDGSFPMELEAKEKSPSKNETECEMSQARGKESDEAGFSGGHGERCVLEGTITEPSTDELCLRKRKRDEQNIELGQVKEAPQQINQTAKNGASNQQKGTQNPSSTTNKPAEKQGKQDSQPTDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFSFPPDMPMPYLPQHPSHLGLIPPGLPNMASSPDLLRRTINSQLTSLVGGFKEPVQLLQIPNGWENELHNAVPMSFDVAAPTSGQDVDGTICSSSTPQCNTRAQL 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4524480 4527747 + Carg01359-RA Car15g00796 162633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00796 491 MobiDBLite consensus disorder prediction 163 199 - -
Car15g00796 491 MobiDBLite consensus disorder prediction 233 283 - -
Car15g00796 491 MobiDBLite consensus disorder prediction 236 277 - -
Car15g00796 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 347 IPR011598 GO:0046983
Car15g00796 491 MobiDBLite consensus disorder prediction 156 211 - -
Car15g00796 491 Pfam Helix-loop-helix DNA-binding domain 300 348 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00796 Car-Chr15:4524480 Car18g00999 Car-Chr18:10438430 3.30E-106 dispersed
Car15g00796 Car-Chr15:4524480 Car04g02113 Car-Chr4:17212997 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4838 PF00010 HLH 5.90E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00796 - - csv:101216110 762.681