Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00811 ATGGCTGTTGACGTTCATTCCTCTTTTCCCAATGGAATTTGTGATCCTCCCACTAGCCCTGACGAAATCGGTCAACTTCCATTAATGAATGCTTCTGATAATCCCAAGCTCGACACTAAGCTTTCAGTCTCGCCCACTGTAGATGAAAATCAGATGAAGCTCTCTGATAATGAATCTCCCTCTTCTTGTTCTTCTTCTTCTTGTTCTTCTTCGTCGTTGTCGTTCGATGTCGAGAAATCAGAGGATTCTACCCTTAACGGTCATATTCCTGTTCGTCCCCACCACGAATTGAAGCTCAATAATGGAGAGATAAGCGTATTGGAGCCTCATTCTCAGCTTCCTAAACCCGAGGCCCCACCTGGACTTTCCGTTTCTTCCGTTGGTGAACCGCCGTACAAACGATCGCAGAGTTTGGCCGAGAATAACTCCGTCGACATGTCGTCGATTGGGAAGTTTATACGGGAGAGAAGCAATAGTTTATCGGCCGCGATTCTCAAGCGGATTTCGTCGCTTAAGGATGAAGAGAAGGACGACGTGGACGAGAACGGGAAGTCTCAGACCGGCGTCACTGAAATCAACCTCTCCGGTTTCAAAGTGGTGGTGAAGCGGAAGAGCGATGAAGAGAGAGACAGAGAACTGAAAGGAAGAATCAGCTTCTTTTCGAGGTCGAATTGCAGGGATTGTAAAGCGGTTAGGAGTTTCTTCAACGAAATGGGATTGAGATTTGTTGAGATCAACGTCGACGTTTTTCCTCAGAGAGAGAAGGAGCTGATGAAGAGGACTGGGAGTTCATTGGTGCCGCAGATTTTCTTCAACGAGAAGCATTTTGGAGGTCTCGTGGCGCTGAACGCACTGAGAAACAGCGACGAATTTGACCGGAGAATCAGAGATATGCTCATCAATAAATGTCCCGACGACGCACCGGCTCCGCCGGTCTACGGTTTCGACGATCCAGAGGAGGGGTCGCCGGACGATCTACTGGAGATCGTGAAATTTCTTAGACAGAGATTGCCGATTCAGGACCGTCTGATCAAGATGAAGATCGTCAAGAACTGCTTCTCCGGCAGCGAAATGGTGGAAGCGCTTATTCAGCGCCTTGATTGCGGCCGTAGAAAGGCTGTTGAAATTGGAAAGCAGATGACCCAGAAGCTCTTTATCCATCATGTCTTTGGGGAAAGTGAATTTGTAGATGGGAAACATTTCTACCGTTTCCTTGAGCATGGGCCATTTATATCCCGGTGCTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCACCGCCATGGTTGCACAAAAACTAGCCAAGATCATGTCCGCCATTTTAGAGTCCTATGCCTCTCAAGATCTCCAACATCTTGATTATCTCACCATTAGCAACACTGAAGAGTTTCGAAGGTACATGAACTTAATTCAAGATCTTCACCGTGTGAACCTCTTGGAATTGTCACATGATGAAAAGTTGGCTTTTTTCTTAAACCTGTACAATGCTATGGTCATCCATGGCTTCATACGATTTGGACGAGTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCCGACTTCCAATACTTGGTCGGCGGACACCCATATTCACTCATCGCCATCAAAAATGGGATTCTCAGAGGAAATCGAAGGCCACCCTACTCCCTTATCAAGCCCTTCAGCGCTTCTGACAAGCGATTGGAGCTTACGTTTGGGAAAGTGAATCCATTAATTCACTTTGGACTGTGGAATGGGACGAAGTCTAGCCCAAGACTCAGATTCTTTACTCCTCAAGGAGTGGAAGCAGAGCTAAGATGCGCCGCAAGGGAGTTCTTCCAAACTGGGGAAGTGGAGGTTGATTTGGACAAAAGAACTGTGCATCTCCCTGGAATCATCAAGTGGTTCAGTGTGGACTTCGGAGCAGAGAAGGAGATTTTGAGGTGGATAATGAAGTTCTTGGATGCCAAAAAAGCAGGCCTTTTGACGCACCTTTTGGGGGATGGAGGTGCTGTCAACATAGCCTACCAGAACTATAACTGGACCATGAATTCTTGTTGA 2049 46.9 MAVDVHSSFPNGICDPPTSPDEIGQLPLMNASDNPKLDTKLSVSPTVDENQMKLSDNESPSSCSSSSCSSSSLSFDVEKSEDSTLNGHIPVRPHHELKLNNGEISVLEPHSQLPKPEAPPGLSVSSVGEPPYKRSQSLAENNSVDMSSIGKFIRERSNSLSAAILKRISSLKDEEKDDVDENGKSQTGVTEINLSGFKVVVKRKSDEERDRELKGRISFFSRSNCRDCKAVRSFFNEMGLRFVEINVDVFPQREKELMKRTGSSLVPQIFFNEKHFGGLVALNALRNSDEFDRRIRDMLINKCPDDAPAPPVYGFDDPEEGSPDDLLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIQRLDCGRRKAVEIGKQMTQKLFIHHVFGESEFVDGKHFYRFLEHGPFISRCFNFRGSVNDNEPKPTAMVAQKLAKIMSAILESYASQDLQHLDYLTISNTEEFRRYMNLIQDLHRVNLLELSHDEKLAFFLNLYNAMVIHGFIRFGRVEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSLIKPFSASDKRLELTFGKVNPLIHFGLWNGTKSSPRLRFFTPQGVEAELRCAAREFFQTGEVEVDLDKRTVHLPGIIKWFSVDFGAEKEILRWIMKFLDAKKAGLLTHLLGDGGAVNIAYQNYNWTMNSC 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4584120 4588782 + Carg01344-RA Car15g00811 162648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00811 682 ProSiteProfiles DEP domain profile. 333 406 IPR000591 GO:0035556
Car15g00811 682 MobiDBLite consensus disorder prediction 35 70 - -
Car15g00811 682 Pfam Glutaredoxin 219 275 IPR002109 -
Car15g00811 682 MobiDBLite consensus disorder prediction 110 140 - -
Car15g00811 682 MobiDBLite consensus disorder prediction 1 70 - -
Car15g00811 682 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 337 404 IPR000591 GO:0035556
Car15g00811 682 ProSiteProfiles Glutaredoxin domain profile. 205 302 - -
Car15g00811 682 Pfam Protein of unknown function, DUF547 483 608 IPR006869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00811 - - - csv:101218879 1139.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02888 Car-Chr4:21778861 Car15g00811 Car-Chr15:4584120 1.79E-125 dispersed
Car15g00048 Car-Chr15:364908 Car15g00811 Car-Chr15:4584120 7.33E-125 dispersed
Car15g00811 Car-Chr15:4584120 Car09g00179 Car-Chr9:906427 2.25E-20 dispersed
Car15g00811 Car-Chr15:4584120 Car04g02101 Car-Chr4:17147731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00811 Car_Chr15 FPKM 45.112087 49.56266 20.456652 23.379898 12.966485 15.140338 13.491481 6.771721 9.397544 8.752611