Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00816 ATGGCCGTCACTGGCTCTCCCGACTGGTCACTCCCCTCATCAACCTGTTTCAGAAAATCCCGTCTCCTTACTTTCATCCCCGCCTCCAATCTCGCTCTCCTTTTCTCTCTTCCAAATCTTCGATCTCTTCACCTAAATTCTTCCGGGTGCCCGTCACCAATCCTAGAATCATCGCCCACTTCCCTCCCCGAGATCGATTCGGACTCTAATCTTCAGGATTTTCAACTTCCCTCGTCGTCCAGTGTAGAAGATTTGAACGATTTCTTATGTGGATTACCCCAAAACCCCGGACGGGAGGATTTGATCTATGAGTACTACGTGAAAGCGAAGGAAACGCCAGGGTTTAGACCTGAGAAATCAACATTGAGGCATCTAATCAGGTACTTAGTGCGATCGAAGAACTGGAATTTGATTTTTTTAGTTTCTAGAGATTTTGTGGATTATGATGTTTGCCCTGATAGAGATACTTGTTCTAGATTGGTTAGTAGTTGCGTTAGAGGTAGAAAATTTAAAGTTGTTAGGGCTCTGCTTGAGGTTTTTGAACGGGATAGGGATGTTGCTACGGCTGCATTTGAAGCTGCCATGAGAGGCTACAATAAGCTTCACATGTACAAAAGTACTATCCTGGTTTTCCAGCGCTTGAAATCTGCTAAAATTGAAGCAGATTCTGGATGTTACTGCAGGGTCATGGAAGCCTACCTTAAACTTGGGGATTCTGAGAGAATTATGGAACTGTTTAATGAAATTGAGAGTAGGATTTCTGATTTTACACCCTTTTCCACCAAAATTTATGGGATACTTTGTAAGTCATTAGCGAAATCGGGGCGAGTTTTCGAGTCGCTCGAGTTCTTTAGAGATATGAGGAAGAAAGGGATTGTAGAAGATTACACCATTTACTCTGCTTTGATATGCACTTTTGCAAGTATCCAAGAAGTTAAATTAGCTGAAGATCTTTACAATGAAGCAAAAACCAAGAAGTTATTGAGAGACCCTGCAATGTTTCAAAAGCTTATATTGATGTATATTCAACAAGGGTCATTAGAGAAAGCACTTGAGATTGTTGAAGTGATGAAGGACTTCAAAATTGGTGTATCAGATTGCATTTTCTGTGCAATTGTCAATGGCTACGCCACGAGAAGGGGCTATAATGCTGCGGTTAATGTTTACGAAAAGCTGATTAGAGACGAGTGCGAGCCAGGACAAGTGACGTACGCCTTGGCGATCAACGCTTACTGCCGTGTTGGGCTGTACTCAAAAGCGGAGGACGTGTTTGTAGAAATGGAGGAGAAGGGGTTTGACAAATGTGTAGTTGCTTACTCTAGCTTGATATCAATGTATGGGAAGACAGGGAGATTGAAGGATGCAATGAGGCTGTTAGCAAAGATGAAAGAAAGAGGGTGTCAGCCAAATGTTTGGATTTACAATATCCTGATGGAGATGCATGGGAAGGCTAAGAATTTGAAGCAAGTTGAGAAGCTATGGAAGGAAATGAAGCGCAAAAAGATAGCACCTGATAAGGTTAGCTATACAAGTATCATAAATGCTTATGTGAAGGCAGCAGAATTCGAGACATGCGAGCGATATTACCGTGAGTTTCGGATGAACGGGGGAGCCATCGACAAGGCGATAGCGGGAATCATGGTTGGCGTGTTCTCGAAGACGAGTCGGGTTGATGAACTGGTGAAGCTTCTTAGGGACATGAACTTAGAAGGAATACGCTTGGATGAGAGGCTGTATAGGTCAGCCTTGAATGCTTTGTTGGATGCTGGGTTGCAAGTGCAAGCAAAATGGTTGCAAGATCATTGTGCTGGAAAGTCGGGCTTTGTTTAA 1830 43.11 MAVTGSPDWSLPSSTCFRKSRLLTFIPASNLALLFSLPNLRSLHLNSSGCPSPILESSPTSLPEIDSDSNLQDFQLPSSSSVEDLNDFLCGLPQNPGREDLIYEYYVKAKETPGFRPEKSTLRHLIRYLVRSKNWNLIFLVSRDFVDYDVCPDRDTCSRLVSSCVRGRKFKVVRALLEVFERDRDVATAAFEAAMRGYNKLHMYKSTILVFQRLKSAKIEADSGCYCRVMEAYLKLGDSERIMELFNEIESRISDFTPFSTKIYGILCKSLAKSGRVFESLEFFRDMRKKGIVEDYTIYSALICTFASIQEVKLAEDLYNEAKTKKLLRDPAMFQKLILMYIQQGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYNAAVNVYEKLIRDECEPGQVTYALAINAYCRVGLYSKAEDVFVEMEEKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAKMKERGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIINAYVKAAEFETCERYYREFRMNGGAIDKAIAGIMVGVFSKTSRVDELVKLLRDMNLEGIRLDERLYRSALNALLDAGLQVQAKWLQDHCAGKSGFV 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4606138 4607967 + Carg01339-RA Car15g00816 162653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00816 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Car15g00816 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Car15g00816 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Car15g00816 609 Pfam PPR repeat 337 361 IPR002885 -
Car15g00816 609 Pfam PPR repeat 507 536 IPR002885 -
Car15g00816 609 Pfam PPR repeat 226 251 IPR002885 -
Car15g00816 609 Pfam PPR repeat 265 292 IPR002885 -
Car15g00816 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Car15g00816 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Car15g00816 609 Pfam Pentatricopeptide repeat domain 423 483 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00816 - - - bhj:120067018 1085.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00816 Car-Chr15:4606138 Car07g00015 Car-Chr7:98229 6.25E-10 dispersed
Car15g00816 Car-Chr15:4606138 Car14g00193 Car-Chr14:911932 2.27E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0676 . . . . . . . . . . . . . . . . . Cmo15g00902 . Cma15g00867 . Car15g00816 . . Bhi12g01005 . . . . . Lcy10g1566 Cla01g00682 Cam01g0715 Cec01g0706 Cco01g0736 Clacu01g0701 Cmu01g0673 Cre09g1832 Lsi09g00740 Csa05g01316 . Cme09g01257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013247 0 3 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00816 Car_Chr15 FPKM 71.577965 78.532845 93.931473 98.252075 86.067436 85.158104 86.643364 61.692951 57.382908 64.239922