Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00830 ATGGACGCCGACGCTTCCAACCGCCGCGTAGGCCTTCTTCTGTGGGTCATTATTGCGTTCAGTGGCGTCGTTTTCACTGCTGCTGAGCTTCAGCGATTTTCCCATCCGCCCAAAGACGACGGCTCTATCAGCCTTCTGGTCGTCGGAGACTGGGGACGAAAGGGCGAATACAACCAATCTCAAGTTGCAGCTCAGATGGGAATCATAGCAGAAAAATTGGAGGTTGATTTTGTAATTTCAACGGGCGATAATTTTTACGATAGGGGACTGGAGGGTACCGACGATCCTGCATTTGAAGAGTCATTTTCCAAAATATACACAGCACCAAGCTTGCAAAAGGAGTGGTATAGTGTTTTGGGTAACCATGACTATAGAGGAGATGTTGAGGCCCAACTGAGCCCATATTTGAGAAAATTGGATAACCGATGGATTTGCTTGAGATCTTTCATAGTTGATACAGAAATTGTGGAGTTCTTTTTTGTGGACACAACTCCTTTTGTGGACAAGTATTTTAATGATCCCGGAGAAGAGGTCTACGATTGGAAGGCTATTTTACCAAGACAAAATTACCTTTCTAACCTTCTCAAGGAAGTGGAATCAGCTCTAAAGGATTCAAATGCAAAATGGAAGATAGTTGTGGGACATCACACATTAAAAAGTGCTGGACAACATGGTGACACTCAGGAGCTACTTCACCAGCTTCTTCCCATTCTTGAGGAAAACAAAGTGGATTTCTACATGAATGGACATGACCATTGCTTGCAACACACAAGCAGCATGACCAGCCCACTTCAATATTTTACAAGTGGGGGAGGATCAAAGGCATGGAGAGGAGACATAAACTGGATGGATCCAAAGGAGTTGAAGTTTTATTATGATGGGCAGGGCTTCTTGTCCTTACAAATCACTCCTTCCCAAGCTAACTTTACATTCTTTGATGTCTTTGGCAATGTGTTGCACCAATGGGCCTCCTCCAAGCCACTTCTTCATCACTCTGCCATTTGA 1005 44.28 MDADASNRRVGLLLWVIIAFSGVVFTAAELQRFSHPPKDDGSISLLVVGDWGRKGEYNQSQVAAQMGIIAEKLEVDFVISTGDNFYDRGLEGTDDPAFEESFSKIYTAPSLQKEWYSVLGNHDYRGDVEAQLSPYLRKLDNRWICLRSFIVDTEIVEFFFVDTTPFVDKYFNDPGEEVYDWKAILPRQNYLSNLLKEVESALKDSNAKWKIVVGHHTLKSAGQHGDTQELLHQLLPILEENKVDFYMNGHDHCLQHTSSMTSPLQYFTSGGGSKAWRGDINWMDPKELKFYYDGQGFLSLQITPSQANFTFFDVFGNVLHQWASSKPLLHHSAI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4744907 4748976 + Carg01325-RA Car15g00830 162667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00830 334 Pfam Calcineurin-like phosphoesterase 44 253 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00830 K14379 ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2] - csv:101221226 597.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g545 . . . . Bpe13g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01958 . . . . . . . . . . . . Cmo15g00921 . Cma15g00883 . Car15g00830 Cpe13g00432 . Bhi12g00974 . . . . . Lcy10g1587 Cla01g00660 Cam01g0690 Cec01g0682 Cco01g0710 Clacu01g0679 Cmu01g0653 Cre09g1853 Lsi09g00714 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004118 1 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 2 2 3 2 1 5 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00830 Car_Chr15 FPKM 5.293924 4.911856 6.427265 6.656491 10.967402 9.6476 11.140455 10.326219 9.980046 11.410572