Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00833 ATGCAGGTGAGCGATAACTCTGTGGGTTTGAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTGTTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATATCAAAGTGAGGAGGAATGAAGTGTTGGGGAGTATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAATGTTAGTGTTAACCATGTTCATGCCTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAGCCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACGGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCGGAGAGGGATATCTTCGAAAAGCAACACGGGTGGATGATAAGAACAATGGAAAAGGAACCTTCACCCATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCGTATATTGAATCGTTGGATATGATGTCAGGAGAGGAGGACCGGGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGACCCTTCAGGCTGCTGGGTTCCCATCATCTTGGAGTTGTTTTGACATTTCCTGTTTACAAATCCAAATTGCCATCCATACCGACTGAAGAAGAACGGATAGAAGCAACAGCAGGCTACGTTGGCGGAGCCTTTGATGTTGAGTCACTCGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACGAACTCTTCTGATCTTCTCGTGATGTATGGTCATCAATATCAAGATGGTGACTTGTCGCTTTCGCATGAGAGCAGCCTTGATTTCGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTAACTACTGCATTCTTATTCTTCGTGATCGGTTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATAAAATGCAAGTACTGAAAGTTCGAGCGGAGGCTGCCGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGGACACCAATGAATGGCATCCTCGGTGCGTATATTCCTGTCTCGCTTTGCTTTTACCGAATGAGCTCGTTTTACATGTACAAAGGATACTCAAATCTATTATCTTTGTATGCATCAATTTCAGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCCACACAGAAGGATTATGCTCAAACTGCCCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTCGACCGGGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTTGATGACGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTAATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGAATTCAAAAGTCTCCATGGACAAGGAATATGTCAACGGAATATCCGATAGTGGCTTATTCGTATTGGATGGTCGTGAATTTCAAACTTTGAGTGGACGCGAGGCAGCCGATGATCAGAACAGTTGGGATAACTTCAAGCATCTAATCGCTGACGACAACTTCCAGTCGAATGCCGCTCCAAACAACACAGCAGTTACCAACAAGGGTTGTGATAATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTTTTACATGCCCAAAATCGAGTTTTCACGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAATTATGGAGGGACTGGTATTGGTTTGAGTATCAGCAAATGTTTAGTTGAGTTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTATTTGGAAAATGTAAGAAAAACTCAATGAATGATATGAAAAAGCCCAACTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATAGTAGTTGATAGCAAACATGTTAGAGCTTCTGTAACTAGATATCATTTGAAGAGACTTGGTATCATAGTTGAAGTCACCAATAGCATCAACATGGCAGCTTCTTTATTCAGAGAAAATGGATCCACACTACCAGGAAACACAATCCTTCCAGATATGATCTTAGTTGAAAAGGACATACTAAATTCTGATGAGGAATGTGGGATCATTCGTCAACTGAACTGGAAACCGAACGGTAGTTCGGTTAAGTTTCCAAAGCTGATCCTTCTCGCTACCAATATTGCCACTGCTGAACTAGACAAGGCAAGAGCATCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTGAGGGCGACTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGCCGAATGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACCGAGTAAACCGTCGGGTCGCTGCAGGTGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGAAAATCTGCCCTGAAGTTGCTTCAGCTGCCGCATAATTTTGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCGACTCGTCGTATCAGGACGATGGAGGTCGAGGCAAACAAAGGAGGATTGTCTGCAGCAGAAGGCAAATGCCCTATACCAATATTAGCAATGACTGCAGACGTGATTCATGCTACGTACGAAGAATGCCTGAAATGCGGTATGAATGGCTACGTCTCGAAACCGTTTGAAGAAGAAAATCTATACAAGGAAGTTGCCAGATTTTTCAAAAAACCATAG 3045 42.96 MQVSDNSVGLKWNEQMGTTKKGYTFVQANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIRTMEKEPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTRPFRLLGSHHLGVVLTFPVYKSKLPSIPTEEERIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHKMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGAYIPVSLCFYRMSSFYMYKGYSNLLSLYASISGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAENSKVSMDKEYVNGISDSGLFVLDGREFQTLSGREAADDQNSWDNFKHLIADDNFQSNAAPNNTAVTNKGCDNVTLMVSVEDTGIGILLHAQNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKCKKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINMAASLFRENGSTLPGNTILPDMILVEKDILNSDEECGIIRQLNWKPNGSSVKFPKLILLATNIATAELDKARASGFADTVIMKPLRATMVAACLQQVLGVKNQRRPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMDGFEATRRIRTMEVEANKGGLSAAEGKCPIPILAMTADVIHATYEECLKCGMNGYVSKPFEEENLYKEVARFFKKP 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4772091 4778175 + Carg01322-RA Car15g00833 162670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00833 1014 Pfam Response regulator receiver domain 883 1007 IPR001789 GO:0000160
Car15g00833 1014 ProSiteProfiles Response regulatory domain profile. 730 860 IPR001789 GO:0000160
Car15g00833 1014 ProSiteProfiles Histidine kinase domain profile. 384 705 IPR005467 -
Car15g00833 1014 Coils Coil 460 480 - -
Car15g00833 1014 Pfam CHASE domain 107 287 IPR006189 -
Car15g00833 1014 ProSiteProfiles CHASE domain profile. 104 316 IPR006189 -
Car15g00833 1014 ProSiteProfiles Response regulatory domain profile. 882 1011 IPR001789 GO:0000160
Car15g00833 1014 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 522 702 IPR003594 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02077 Car15g00833 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00025 Car-Chr4:110214 Car15g00833 Car-Chr15:4772091 0 dispersed
Car09g00334 Car-Chr9:1846239 Car15g00833 Car-Chr15:4772091 7.26E-54 dispersed
Car15g00833 Car-Chr15:4772091 Car20g00576 Car-Chr20:3233680 0 dispersed
Car15g00833 Car-Chr15:4772091 Car04g02077 Car-Chr4:16922796 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4841 PF02518 HATPase_c 2.40E-31 CL0025 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00833 K14489 - csv:101209777 1743.4