Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00835 ATGAGGGAACCCCATTTGGGGTTTGGGGTTTTCCTTTTGATTTTTGTCTTGTTTCTGCTGTTTTTGGATTTCTCTGTTTACGCTCAGCCGGCTGGTGCTGGTGGTGATGATGGGTCAGTGATGAATCTTTTGAAGACTAGTATTGGAGCCCCGGATTCTCTTGGATGGACTGGTTCGAATTACTGTGAATGGAAGCACGTTAAATGTGATTCTCAGAACCGAGTGGTTAAAATTCAAATTGGGAACCAAAATCTCAAGGGATCACTTCCCTCGGATCTCTTTAGCCTCTCGGCGTTAGTGCAATTAGAGGTACAGAGCAATCAGCTGACTGGGCCGTTTCCTAATCTCGCTGATTCACTCCAGATACTTCTAGCGCATGATAATCTGTTTACATCCATGCCGGCTGATTTCTTCGCCAAGAAGTCGGCTCTGCAGACGATAGATGTCGACAATAATCCCTTCATGTCGTGGCAAATTCCTGATAGCATTCGAGATGCTTCTGGTCTACAGGAATTATCGGCCAATCGCGCTAATGTAACTGGTAACACCCTTCAAATTTTCGATGGCACGACGTTTCCGACTCTTAGGAACTTGCATTTGGCGGGTAATTTTCTTGAAGGTGGATTACCAGTAAGCTTTGCGGGTTCTTCGATTCAGTCGCTTTGGTTGAATGGACAACAGAGTAACTCTAAGTTAAACGGTTCTATCGCCGTATTGCAAAACATGACTAATCTGCAGGAGGTTTGGTTGCATATGAACCACTTCTCAGGTCCTTTGCCCGATTTCTCTAACCTTCAAGGGTTAGAGACCTTGAATTTGAGGGATAATCAGCTTACGGGTATTGTTCCTTCGTCCTTGATAAACTTGAAATCCCTCACAGTTGTAAATTTGACGAATAATCTGCTTCAAGGACCCACCCCTGCGTTTAATCCTAATGTAAAGCTGGATATGAGACCAGGATCCAACAATTTTTGCACGGATTCTCCGGGTGAGCCTTGTGATCCCCGAGTGAGTGCTCTGTTATCGGTTGCACAATCAATGGGGTTTCCTACAGTCTTTGCCCAAAGCTGGGTAGGGAACAATCCTTGTGAGGATTTCAAAGGTGTTACATGTACTGGGAACCCCGAAAATATAACCATAATCAACTTTAAGAATATGGGTCTTGCGGGCTCTATTTCTCCTAGCTTTTCATTGCTTACATCTGTACAGAAGTTGATTCTCTCTAACAATTATCTTTCTGGCACAATACCAACCGAACTTGTGACTATGCCTAGTCTTATAGAATTAGATGTCTCCAGTAATAGGCTTCATGGGAAAGTGCCCGCCTTCAGGAAAAATGTGATTGTGAACACACAGGGGAACCCGGATATTGGGAAAGATCGGCCCAGTTCTCCCGCACCAGGCTCTCCCGAAGAGGGAGCCCCCTCCGATTACGGAACAGGCGACGTTCCTGATGGGGGTGTTAAGAAAAGTAATACTGGAGCGGTTGTTGGTTCTATAATTGGTGTTATTGTTGGTCTCCTTTTAGTTGGGACTGCGATTTTCTTTTGGTACAAGAGAAAGAAGAGACATGGTAGTATAGTTCAGAACCCAAATACAGTAGTGGTACATCCTAGTCATTCTGGGGATCAAAATTCAGTGAAGATTACAGTTACGGAGACGAGGGCCGATGGGAGTACTCCTGAATCCAGCGGAGTTCCTATTGCTGGACCGAGTGATGTCCGTGTGGTTGAGGCAGGAAACCTCGTTATCTCCATTCAAGTTTTGAGGAATGTAACTAATAATTTTAGCCCTAGTAATATATTGGGGAGAGGGGGTTTTGGAACTGTTTACAAGGGAGAATTACATGATGGTACGAAGATCGCCGTGAAGAGAATGGAGTCTGGAGTCGTAGGCGAGAAGGGTTTGAATGAATTCAAGGCTGAGATTGCAGTTCTTACTAAGGTTCGTCATAGAAATTTGGTTGCGCTTCTCGGGTATTGCTTAGATGGAAACGAGAGGCTTCTGGTTTATGAATACATGCCCCAGGGGACTTTTAGTAGGTTTCTATTTCACTGGAATGATGAAGGGATCAAACCCCTTGAATGGAAAAGAAGGCTGACTGTTGCCTTGGATGTAGCCAGGGGTGTTGAGTATTTGCATAGTTTAGCACATCAAAGCTTTATCCATCGCGATCTTAAACCATCAAACATTCTTCTTGGAGATGATTTGCGGGCTAAAGTAGCAGACTTTGGGTTGGTTCGTCTTGCTCCTGAAGGGAAAGCGTCAGTCGAAACAAGACTCGCAGGAACGTTTGGTTATCTTGCCCCAGAATATGCTGTAACCGGACGAGTTACAACCAAGGTCGATGTTTATAGCTTTGGGGTGATCCTCATGGAGATGATATCTGGTAGAAAAGCAATTGACGAGAGCCAGCCCGAAGAAAGCTTGCACCTTGTATCGTGGTTCCGCAGAATGTACATTAACAAGGACACTTTCTCAAAGGCCATAGACCCTTCAATGCACATAGACGAGGAGACCCTTGGCAGCATCTGCAGGGTTGCGGACTTGGCTGGCCACTGCTGTGCAAGGGAGCCATACCAGCGACCCGACATGAGTCACGCAGTCAACGTTCTTTCGTCTCTAGTCGATGTGTGGAAACCAACAGAACCAGACTCGGAAGACACATTGGGAATCGATCTCGAGATGTCGTTACCACAGGCACTTAAGAGATGGCAGGCATTTGAAGGAAATAGCAATTTGGACATGACATCGTCCTCATCATCGTTGCTTGCGAGTGGAGACAATACACAAAGCAGCATCCCAAACCGACCACCTGGTTTCGCAAATTCGTTTACCTCTCTCGACGCACGGTGA 2856 45.66 MREPHLGFGVFLLIFVLFLLFLDFSVYAQPAGAGGDDGSVMNLLKTSIGAPDSLGWTGSNYCEWKHVKCDSQNRVVKIQIGNQNLKGSLPSDLFSLSALVQLEVQSNQLTGPFPNLADSLQILLAHDNLFTSMPADFFAKKSALQTIDVDNNPFMSWQIPDSIRDASGLQELSANRANVTGNTLQIFDGTTFPTLRNLHLAGNFLEGGLPVSFAGSSIQSLWLNGQQSNSKLNGSIAVLQNMTNLQEVWLHMNHFSGPLPDFSNLQGLETLNLRDNQLTGIVPSSLINLKSLTVVNLTNNLLQGPTPAFNPNVKLDMRPGSNNFCTDSPGEPCDPRVSALLSVAQSMGFPTVFAQSWVGNNPCEDFKGVTCTGNPENITIINFKNMGLAGSISPSFSLLTSVQKLILSNNYLSGTIPTELVTMPSLIELDVSSNRLHGKVPAFRKNVIVNTQGNPDIGKDRPSSPAPGSPEEGAPSDYGTGDVPDGGVKKSNTGAVVGSIIGVIVGLLLVGTAIFFWYKRKKRHGSIVQNPNTVVVHPSHSGDQNSVKITVTETRADGSTPESSGVPIAGPSDVRVVEAGNLVISIQVLRNVTNNFSPSNILGRGGFGTVYKGELHDGTKIAVKRMESGVVGEKGLNEFKAEIAVLTKVRHRNLVALLGYCLDGNERLLVYEYMPQGTFSRFLFHWNDEGIKPLEWKRRLTVALDVARGVEYLHSLAHQSFIHRDLKPSNILLGDDLRAKVADFGLVRLAPEGKASVETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMISGRKAIDESQPEESLHLVSWFRRMYINKDTFSKAIDPSMHIDEETLGSICRVADLAGHCCAREPYQRPDMSHAVNVLSSLVDVWKPTEPDSEDTLGIDLEMSLPQALKRWQAFEGNSNLDMTSSSSSLLASGDNTQSSIPNRPPGFANSFTSLDAR 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4783375 4787033 + Carg01320-RA Car15g00835 162672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00835 951 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00835 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Car15g00835 951 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515
Car15g00835 951 MobiDBLite consensus disorder prediction 918 951 - -
Car15g00835 951 Pfam Protein kinase domain 599 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00835 951 MobiDBLite consensus disorder prediction 451 486 - -
Car15g00835 951 Pfam Leucine rich repeat N-terminal domain 337 371 IPR013210 -
Car15g00835 951 Pfam Leucine rich repeat N-terminal domain 36 70 IPR013210 -
Car15g00835 951 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00835 - - K00924 csv:101210025 1583.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02076 Car15g00835 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02203 Car-Chr4:17906975 Car15g00835 Car-Chr15:4783375 0 dispersed
Car15g00703 Car-Chr15:3918110 Car15g00835 Car-Chr15:4783375 0 dispersed
Car15g00835 Car-Chr15:4783375 Car17g00437 Car-Chr17:2931463 0 dispersed
Car15g00835 Car-Chr15:4783375 Car04g02076 Car-Chr4:16915951 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89401 PF00069 Pkinase 4.10E-46 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00835 Car_Chr15 FPKM 11.48505 11.497859 11.205589 10.94257 17.762724 17.461355 17.140392 14.362163 14.065545 13.172072