Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00838 ATGTCTTTCGCCGCCACCCCTCTCTCCATCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCACATCTCCTCTGTCTCCGGCCGCCGCCCAACTGCCGCCGAAACCCACCAATTTCTCCGCCTTCTCTATATCCCAATCCCCATGGCGGCCGACCCAGAATCTAATTCTCTTCTCCCCCAACTCCCTTTTCGCCGCCGGCTTTCAGCCACTACCAGAAAACTCCAATCTCTTCGTCTTCTCTGTTTGGTACTTCAACATCTCAACGGACAGCGTCGTCTGGTCAGCCAACCAACTTTCTCCGGTCAACCGCTCAGCGGCTTTGGTCATCACGCGCACCGGTCAGCTCCGTCTCGACGACGGTTCCGGTCGCAATCTCTGGCCTTCCAACAGTAATGTTTCTGCAAATCCAAATTCAACCCAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGCACATGGGAAAGCTTCCAATTCCCCACCAATACTATCTTGCCTAACCAGACATTAAATGGAACCACCATCGTCTCCAACAACGGCAAATATGCGTTTAAAAACTCTGTTAATTTGACGTTTGGTGCAGAAAGGTACTGGACCTCTGGAAACCCATTCCAGATTTTCCTGATCGAAGGTCAAATCATCATAAACAATCAAACCCCAATTTTCCCTTCTGATTTTAACTCGACCCGGCTGCGGAAATTGGTGGTCGACGATGATGGAAACCTCAAGATTTTCAGCTTCAACCCAAATCTCCGGCGGTGGGGTGTCGTTTGGCAAGCACATATAGAGTTGTGTGAGATCTTTCATACTTGTGGCCCAAATTCCATCTGTATGAGTACTGGCAGTTACAACTCCACCTACTGTGTCTGTGCTCCCGGATTTATCCCCGATCCTCGCGGCGGAGCACGGCAAGGATGCCACCGGAAACTCAACATATCAAAGACACCCAAATTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGAGTTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGCCAAGCGAATTGCTTGAAGAATTCCAGCTGCGTGGGCTATACATTCACCTTCGATGGTAGCGCCCAATGTGCGCTTCAGCTTGACATTTTGTCGAACGGGTTGTGGTCGCCAGGGATGAAGATAGCTGCTTTTGTTAAGGTCGACAATTTGGAAACAGATCACTCAAATTTCAACGGAATGATGTACAGACTCCAAACCACATGTCCAGTTCACATCACCATACGGCCGCCGCCGGTGATTAAAGACAACACGACAAGAAACATATTGATAATCAGCACCATATTCATTGCCGAACTAATTTCCGGGGCGGTTTTCTTCTGTGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACCCTTGGTCTCGAATCGCTTCCCGCCGGCGGGCCGAAGCAGTTCACTTACGCCGAGCTAAAGACGGCCACGAATGACTTCTCGACCTGCATCGGAAGAGGCGGATTCGGCGAAGTCTTCAAAGGAGAGCTGCCGGACAAACGCGTGGTCGCCGTTAAGTGCTTGAAAAACGTCGCCGGTGGCGACCGTGACTTTTGGGCGGAGGTAACCATCATCGCTAGGATGCACCATCTGAATCTGCTTCGATTGTGGGGATTCTGCGCGGAAAAGGATAAAAAAATGTTAGTGTACGAACATATTCCCAATGGTTCGCTCGACAAATTCCTCTTCCCCAAACCTTTACCCTCCGATTCGGAGAAGAACGAAGCAGAGTCGTCCGATGAAACCCCCTCGCTGGATTGGAACATCCGGCACCGAATCGCGATTGGGGTTGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTGGAATGGGTATTGCATCGTGACATAAAACCAGAGAACATCCTTCTGGACAACGATTTTTGCCCCAAATTGTCGGATTTCGGACTGTCTAAACTGAGGCAAAATGAGGAGACGAGGGTGAGCATGTCTCGGATTAGAGGGACGCCGGGTTACGTAGCGCCAGAGCTGGTGAAGTTGGGATCGAATTGGATGACGACGAAAGCAGATGTGTACAGTTTTGGAATGGTGTTGTTGGAGATCATGAGTGGGCGAAGGAATTGTGAGATGAAAAGATCGACGGTGGAGAGTGCGGAGTGGTACTTCCCTGGATGGGCATTCGAGAAGGCGTTCGTGGAGGAGAGGATGGAGGAGATTTTAGACGATCGGATAAGGGATGAGTGCGAGAGTGGAGGGCATTGGGGGATTGTTAATCGCATGATGCAGACGGCGATGTGGTGTCTTCAAAGCCTACCGGAGAAGAGGCCGTCGATGGGGGAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAGATTGCTCCTCCTGAGAAGCCCTCTATTTACTTCTTGTCCGAACACCCTACCAGTACATGA 2424 49.96 MSFAATPLSILLLLFFFFFFTSPLSPAAAQLPPKPTNFSAFSISQSPWRPTQNLILFSPNSLFAAGFQPLPENSNLFVFSVWYFNISTDSVVWSANQLSPVNRSAALVITRTGQLRLDDGSGRNLWPSNSNVSANPNSTQLILRNDGDLIYGTWESFQFPTNTILPNQTLNGTTIVSNNGKYAFKNSVNLTFGAERYWTSGNPFQIFLIEGQIIINNQTPIFPSDFNSTRLRKLVVDDDGNLKIFSFNPNLRRWGVVWQAHIELCEIFHTCGPNSICMSTGSYNSTYCVCAPGFIPDPRGGARQGCHRKLNISKTPKFLQLDFVSFRGGVKQISLQTPNISVCQANCLKNSSCVGYTFTFDGSAQCALQLDILSNGLWSPGMKIAAFVKVDNLETDHSNFNGMMYRLQTTCPVHITIRPPPVIKDNTTRNILIISTIFIAELISGAVFFCAFLKRFVKYRDMARTLGLESLPAGGPKQFTYAELKTATNDFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKDKKMLVYEHIPNGSLDKFLFPKPLPSDSEKNEAESSDETPSLDWNIRHRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRQNEETRVSMSRIRGTPGYVAPELVKLGSNWMTTKADVYSFGMVLLEIMSGRRNCEMKRSTVESAEWYFPGWAFEKAFVEERMEEILDDRIRDECESGGHWGIVNRMMQTAMWCLQSLPEKRPSMGEVVKMLEGKLEIAPPEKPSIYFLSEHPTST 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4824438 4826861 + Carg01317-RA Car15g00838 162675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00838 807 ProSiteProfiles Protein kinase domain profile. 489 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00838 807 ProSiteProfiles EGF-like domain profile. 261 297 IPR000742 -
Car15g00838 807 ProSiteProfiles PAN/Apple domain profile. 306 397 IPR003609 -
Car15g00838 807 Pfam S-locus glycoprotein domain 221 296 IPR000858 GO:0048544
Car15g00838 807 Pfam Protein kinase domain 494 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00838 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Car15g00838 807 Pfam D-mannose binding lectin 91 171 IPR001480 -
Car15g00838 807 ProSiteProfiles Bulb-type lectin domain profile. 47 164 IPR001480 -
Car15g00838 807 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00838 - - - csv:101221701 1347.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00838 Car-Chr15:4824438 Car18g01206 Car-Chr18:11640558 5.20E-105 dispersed
Car15g00838 Car-Chr15:4824438 Car04g02073 Car-Chr4:16864486 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89402 PF00069 Pkinase 1.20E-44 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00838 Car_Chr15 FPKM 8.665012 9.099101 7.302917 7.8668 10.971939 13.147349 13.696187 3.794424 4.408913 4.929141