Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00839 ATGGGGGAAGCTGCTGATTTCACACACTCAAAGAAGCACAGCCTTCTTCTTCACGAGCATGAGGAGAAGCACTTTATGTCCAGTGATGTTGTTCGCGACATCATTATGGGTGTCTCCGATGGCCTCACCGTCCCCTTTGCCCTCGCAGCGGGACTTTCTGGTGCCGATGTTACCTCCAGCATCATCCTCATCGCCGGAATTGCTGAAGTTGCTGCCGGAGCTATCTCCATGGGACTTGGCGGATATTTGGCAGCTAAGAGTGAAGCGGATCATTACGCAAGAGAATTGAAGAGGGAAGAAGAAGAGGTGATTGCAGCTCCAGACATAGAGGCTGCTGAGGTGGCAGATATATTGTCACAGTATGGGGTTGAAGCCCATGAGTATGGGCCTGTTGTTGCTGCTCTTAGAAGGAACCCTCAAGCATGGGTTGATTTCATGATGAAATTTGAGTTGGGGTTGGAAAAGCCAGACCCAAAGAGGGCAGTAATAAGTGCCTTAACAATAGCTATGTCTTACATAATGGGAGGGTTGGTGCCCTTATCGCCTTACATGCTGTTCCCTTCGCCTGCAGAAGCTGTGATTGCTTCGGTGATCGTTACTATATTAGCATTGCTTGTCTTTGGCTTTGCCAAGGGCTATTTCACTGGCAATCGCCCCATAATGAGTGCCCTACAAACTGCCTTAATCGGAGCCATTGCGTCCGCCGCTGCGTTCCTTATTGCAAAGGCTTTTCGTACCTAA 741 49.39 MGEAADFTHSKKHSLLLHEHEEKHFMSSDVVRDIIMGVSDGLTVPFALAAGLSGADVTSSIILIAGIAEVAAGAISMGLGGYLAAKSEADHYARELKREEEEVIAAPDIEAAEVADILSQYGVEAHEYGPVVAALRRNPQAWVDFMMKFELGLEKPDPKRAVISALTIAMSYIMGGLVPLSPYMLFPSPAEAVIASVIVTILALLVFGFAKGYFTGNRPIMSALQTALIGAIASAAAFLIAKAFRT 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4831510 4832862 + Carg01316-RA Car15g00839 162676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00839 246 Pfam VIT family 31 241 IPR008217 GO:0005384|GO:0030026
Car15g00839 246 Coils Coil 82 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00839 K22736 VIT; vacuolar iron transporter family protein - csv:101210926 384.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02072 Car15g00839 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00974 Car-Chr4:5619449 Car15g00839 Car-Chr15:4831510 2.23E-72 dispersed
Car04g02354 Car-Chr4:18932856 Car15g00839 Car-Chr15:4831510 4.80E-06 dispersed
Car14g01004 Car-Chr14:8076449 Car15g00839 Car-Chr15:4831510 7.13E-48 dispersed
Car17g00013 Car-Chr17:56549 Car15g00839 Car-Chr15:4831510 2.44E-10 transposed
Car15g00839 Car-Chr15:4831510 Car04g02072 Car-Chr4:16857531 1.41E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g520 Blo01g00774 . Bda01g01790 . Bpe13g01003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0350 Cone9ag0383 . Csa05g01975 . . Blo06g01034 . . . . Bpe02g01968 Bma01g00491 . . Cmo04g02228 Cmo15g00933 Cma04g02135 . Car04g02072 Car15g00839 Cpe13g00422 . Bhi12g00956 . . . Hepe02g2610 . Lcy10g1377 Cla01g00647 Cam01g0676 Cec01g0667 Cco01g0695 Clacu01g0664 Cmu01g0637 Cre09g1869 Lsi09g00699 . Chy09g00811 Cme09g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000924 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 4 3 4 4 3 3 2 3 3 3 2 2 2 3 2 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00839 Car_Chr15 FPKM 0.0 0.0 4.322355 4.251348 4.313471 4.938836 3.946894 0.0 0.0 0.0