Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00849 ATGTCGGAACTGTTGGATGATGGAAGTCCTACATCAGCTAATTTAGGGATTGATCATGGGGTTATGACTGGTTCCTTCACCGTTTTTCTGTTTGTAAAGAGGTTGTCGGCGGTGGGTTCAGTTGCTTCACTGCCGGAGAGGACAACAATGGCGTCGGTGGCGTGTGGGTTTGTGAGCTGGTATGAGGTCTTCGTGTCGAGTGATAGAGGGAGAAGAGAGGTTCATTATTATCTGAAGCGTGGCGATGGGGGTTCAGATCTGGCCGTCGTGGGGAAGGAGAAGAGTTTGAGGCACATGTCTTATCACTATGCATTGCGGGATCGCTTCCTTAGTTCTTCGCTCACCAAGCTTAAGTCTCGCAGAGAGGTCGTTGAATGGCTAAGCTCTGTTGTTTCTGGAGGTTTCTCCATTGGGGTTTTCATTCCTTACGAAATTCTTGAAACTATGCCTTTCCCAGTTAAGATTATGTCTTCCTATTCGCAACGTAAAACATCACAACCATCCGATCGTATAATGGACATAGAAGGTGAAGATGCTTGCCCGTCGACTGTTGTTTCTCAGAAGTTCTCCTCTCAGGACATTCAACAGATAAAATTGGATCAATATACCAGAGATTTTTCATGGCTAGGATCTCCATGGACCTGTAAGCGAAAGCGATGGCACTATCCATCTTTCAGCCGCAATGGTTTTAAGATCTCGGTGGGTAGTTCTGTTCATGACTTTGTATATGTCTTAGCCGAGGAAGGCAAACGTCTTGTTGCATATTTGGAGGATATGTATGAAGACTCTCGAAGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGATATTGTTTTGCCACACAATTTTAGTGACAGAGAGATTTACTTTTCTCTTTGTCTTCAAGATCTCAGTGTTGAATGCATAGATGGGGCGGCGACTGTTCTCAGTCCCCAGCATTTTCAGAAGTTCCAGAACGAGGCGAAACATACTTTATTGGAGCCGTATGTTTGTGAGAAGCAATTCAATAATGATGATATCAAACCCTTTGATATTACACAGATCAAAGGCTATTGGAAGCAAGAAATACTCAGATACATGTACGCTCTTTCTTCTTCGAAAGCCCACACACACTCTCAGCAGTCAGAAGATGACACGAGTGCTGAGATGAGGCCTCGAAAGAGGTATCGACGCTTGAGAAAAGATGACGTGCAAAATACTGAGAAGAGAAAGCCTGGAAACACATCGACATCTTCTCTCGACGTGCGCAGGAACAGCGGTGTTGTTTTCAGTCCTAAATGGGGTTGTGCTTCTAAAACTTTTATAGGCAAGGAGTTGAGCAATGCTTCTTCTGGCCAGTTATCTGTAGGATCAGAGATTGAAGTTCTCTCGCACGACAGCGGTATTCGAGGGTGTTGGTTTAGAGCTTCAATAGTAAAAAAGTGCAGAGACAAGGTGAAGGTGCAATATCACAATCTTCAGGATGCCGATGACGAGTCGAACAAGCTTATGGAATGGCTTTCAGCATCCAGAGTTGCAGCTAATGATCAATTGGGTTTACGCATCAATGGACGATTAGTTATTCGTCCACAGCCCAGTAAGGATAGCAAAGCAGCCTTGGTTTACAATGTCGGGACAATCGTTGATGTATGGTGGCATGACGGTTGGTGGGAAGGAATTATAATTCAGAAGGAATCCGAAGACAAGTTTCGAGTTTACATGCCAGGTGAAAAGCAAGAATTGGTTCTTGGGCGAGACGATTTGAGGCATTCTCGAGAATGGATAGGAAACCGGTGGATGCATATGCAAGAAAGGCCAGATATCGCAACTTCGATTCTGTCCCGTCCAGCAAATGATGGCTTCTCTAACAAGACGTTGATCTTGTTGAGCCAAGACGCTGTTTGTGACAGCAAACAACCAGGAGAAGATCGAAGTCAATCAAGCGATCGAGTCAAGACTAAAGAATTGAGCACAGTTCCAGATCTATCGAAGGACGGTTTACTTGCCAAATTACGGTGGACAGGTTCGAAAAAAAGAAGCCAACCAAGTGGGAGTGGTTCATTGGCGAGTAGATCAGTTTCTTCTCCATCAACTTCTTCCAGTCCATGTGAAAGAGGTGCAACTCCAAACTCCATGAAAGTGGATCATGAGAACTGCAAATACCTGGGGGATTCTCTGTTCGCTTCATCAGTCGTGCCTGCTCTCTCAAGCTTGCAATTCTGTATGGTTATGAAAATCAACGTCGATTGCAATGCTTGTTGTCGAAAACTTCGAAGGATCATCTTGAAAATGAAAGCGATCGAGAAGCATTTGATAGAGAAGGAGAGTCACAGACTGATCGTGTTTGGCCGATTCAGGCCGTCCGACATTGCCATTAAGATCCGGAGGAAGATGAATCGCAGAGTCGAGATTCTCGACGTCGAAGAAATGGAACCCGAACCCATTGCCGATCAAAACCCACCGCCGCCGGTGGAGCAAGCTCAAGTAGTCCCCGGAACCATTGCCGACCACAATCCCAACCCCATGTTTCCTTCGTTGGAGCATGATGATTGGAGGCCGCCCGTGTTTCCATCTCTCGCCGCCCACCAATACCGTTCTTTTTCATCTTCTCCTCCTGATTTCGCCGTAGCTTGCTTGCCAGAGCCGGACATGGAGGAACGCTTCTGGCATTATGGTCATGACTATGAAGTTGTTGGAGATAGAGATCACACCTTCTCTTGTCACGATTACTACCATTACTAG 2736 45.65 MSELLDDGSPTSANLGIDHGVMTGSFTVFLFVKRLSAVGSVASLPERTTMASVACGFVSWYEVFVSSDRGRREVHYYLKRGDGGSDLAVVGKEKSLRHMSYHYALRDRFLSSSLTKLKSRREVVEWLSSVVSGGFSIGVFIPYEILETMPFPVKIMSSYSQRKTSQPSDRIMDIEGEDACPSTVVSQKFSSQDIQQIKLDQYTRDFSWLGSPWTCKRKRWHYPSFSRNGFKISVGSSVHDFVYVLAEEGKRLVAYLEDMYEDSRSNRMVVVRWFHKIDEVDIVLPHNFSDREIYFSLCLQDLSVECIDGAATVLSPQHFQKFQNEAKHTLLEPYVCEKQFNNDDIKPFDITQIKGYWKQEILRYMYALSSSKAHTHSQQSEDDTSAEMRPRKRYRRLRKDDVQNTEKRKPGNTSTSSLDVRRNSGVVFSPKWGCASKTFIGKELSNASSGQLSVGSEIEVLSHDSGIRGCWFRASIVKKCRDKVKVQYHNLQDADDESNKLMEWLSASRVAANDQLGLRINGRLVIRPQPSKDSKAALVYNVGTIVDVWWHDGWWEGIIIQKESEDKFRVYMPGEKQELVLGRDDLRHSREWIGNRWMHMQERPDIATSILSRPANDGFSNKTLILLSQDAVCDSKQPGEDRSQSSDRVKTKELSTVPDLSKDGLLAKLRWTGSKKRSQPSGSGSLASRSVSSPSTSSSPCERGATPNSMKVDHENCKYLGDSLFASSVVPALSSLQFCMVMKINVDCNACCRKLRRIILKMKAIEKHLIEKESHRLIVFGRFRPSDIAIKIRRKMNRRVEILDVEEMEPEPIADQNPPPPVEQAQVVPGTIADHNPNPMFPSLEHDDWRPPVFPSLAAHQYRSFSSSPPDFAVACLPEPDMEERFWHYGHDYEVVGDRDHTFSCHDYYHY 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4937778 4943536 + Carg26876-RA Car15g00849 162686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00849 911 MobiDBLite consensus disorder prediction 671 709 - -
Car15g00849 911 MobiDBLite consensus disorder prediction 635 656 - -
Car15g00849 911 Pfam BAH domain 237 342 IPR001025 GO:0003682
Car15g00849 911 Pfam Agenet domain 455 530 IPR008395 -
Car15g00849 911 ProSiteProfiles BAH domain profile. 234 351 IPR001025 GO:0003682
Car15g00849 911 MobiDBLite consensus disorder prediction 674 705 - -
Car15g00849 911 MobiDBLite consensus disorder prediction 376 390 - -
Car15g00849 911 MobiDBLite consensus disorder prediction 375 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00849 - - - csv:101211122 1006.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00393 Car-Chr8:2535105 Car15g00849 Car-Chr15:4937778 2.05E-08 dispersed
Car09g00907 Car-Chr9:5594523 Car15g00849 Car-Chr15:4937778 5.22E-97 dispersed
Car15g00849 Car-Chr15:4937778 Car02g00531 Car-Chr2:4145625 1.24E-10 dispersed
Car13g00864 Car-Chr13:9174252 Car15g00849 Car-Chr15:4937778 1.34E-21 transposed
Car15g00849 Car-Chr15:4937778 Car04g01995 Car-Chr4:15458453 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g294 Blo01g00495 Blo16g01057 Bda01g02081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02274 . . . . . . . . Car15g00849 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00849 Car_Chr15 FPKM 12.452675 13.436639 16.133856 15.773625 104.915237 94.397881 111.880501 38.448463 35.94038 38.345531