Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00850 ATGCAGAGCTTTGAAAACCCAGATCAGTTCTATGTCCATTCTTCTTCTTCTTCCGTTGTTCTCTGGGGAGATGACAATGGACGATTCCACACGCGTTTTCTTCCGGATATGGAGCTTCAACAATCCGCTGTTGCTGTTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAGCACGGATGTGGGTTCAATAGGAGGAACAGGGTATTTAGACACGGGACAGCAATCGATGCGGTTGAAGAAGCTGGCTCCGCCGCAGACGATGGCGGCTGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATACTAGCCAACAGACTGACACTTCAACAGACATCGACACCGATGAAAGAAACCAGCTTCAGGTAATTACACATGGAACTCTCATGGCGGACTCCATGGGTCAATCTAGAGCTAAATCTGTAGATCAGAAGACGCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCCCGGAAGAGTCGATTGAGGAAGAAAGTAATGCGTTTTTGCTTTTTGAGTGAGCTGAAAGTTGCATATGTCCAGCAGCTGGAAAGTAGTCGACAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCGCGCCAACAGGGCATGTTTGTGGCTTCTGGGGCTGGAGACCATTGTTTATCAATGGCAGGAAATGGTGCCTTGGCATTCGATCTCGACTACGCACGATGGCTCGACGAGCATCAACGGCTGGTCAATGATCTAAGAGCATCTGCAAATTCTCAATTGGGAGATGAGGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAGCTCTTCAGGCTGAAGAGCATAGGCGCCAAGGCCGACGTTTTTCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAGCTTCTAAAGATAGTTGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGCTGATGGGTATATGCAATTTGCAGCAATCATCCCAACAAGCTGAAGATGCATTGTCACAAGGGATAGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTATAGGTCCAGCCAGTTCAGGGAATGTTGCTGATTACATGGGTCAAATGGCGATCGCAATGAGCAAGCTAACGACGCTCGAGAACTTTCTACATCAGGCTGATCTGTTGAGGCAACAAACGCTCCAACAGATGCATAGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTCATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCACTATGGTTAGCACGACCAAGAGAGTGA 1401 48.18 MQSFENPDQFYVHSSSSSVVLWGDDNGRFHTRFLPDMELQQSAVAVAAFHQDDAVDLSPSSVFGLKSTHNTAFPIHLPYGSTDVGSIGGTGYLDTGQQSMRLKKLAPPQTMAAGSFENWGESAMADTSQQTDTSTDIDTDERNQLQVITHGTLMADSMGQSRAKSVDQKTLRRLAQNREAARKSRLRKKVMRFCFLSELKVAYVQQLESSRQRLAQLEQELHRARQQGMFVASGAGDHCLSMAGNGALAFDLDYARWLDEHQRLVNDLRASANSQLGDEELRFLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASIGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRE 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4944132 4946954 - Carg26877-RA Car15g00850 162687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00850 466 Pfam Seed dormancy control 265 338 IPR025422 GO:0006351|GO:0043565
Car15g00850 466 ProSiteProfiles DOG1 domain profile. 247 463 IPR025422 GO:0006351|GO:0043565
Car15g00850 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 172 187 IPR004827 GO:0003700|GO:0006355
Car15g00850 466 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00465 Car-Chr14:2438490 Car15g00850 Car-Chr15:4944132 4.88E-164 dispersed
Car15g00850 Car-Chr15:4944132 Car18g00615 Car-Chr18:7367620 1.91E-106 dispersed
Car15g00850 Car-Chr15:4944132 Car04g02000 Car-Chr4:15511000 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00850 K14431 - csv:101210308 778.859