Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00851 ATGGCCACCTCCGTCATCCAGGGTTTTACCAAGTCGCTTGCCATGACTGTGCTCTCCGAGATCGGCGATAAAACATTCTTCGCGGCTGCGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTCTGTCAGCTTTGATTGTGATGACCATTCTTTCTGCTCTGGTTGGCTGGGCTGCCCCGAATTTGATCTCACGTAAATTGACTCATCATGTCACAACTCTTTTGTTCCTTGGTTTTGGGCTGTGGTCTTTATGGGATGTATTTAATAATGGAGGGGAGTCTGAAGAACTAGCTGAAGTTGAAGCTAAATTGGATGCTGATTTGAAGGCTAACAAAAAAGGTTCCAAAGATGGCAATAAGGTTGATGATGAAGTGAAGAAGCACAATCGGTCAATTCTCTTGCAGTTCTTATCACCAATATATCTAAAGGCATTTTCCATTACCTTTTTTGGCGAATGGGGTGACAAGAGTCAGCTAGCGACCATTGGCTTAGCTGCAGATGAAGACCCACTAGGTGTCGTTCTTGGTGGAATTTTGTAA 552 44.75 MATSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRKLTHHVTTLLFLGFGLWSLWDVFNNGGESEELAEVEAKLDADLKANKKGSKDGNKVDDEVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4950849 4954512 + Carg26878-RA Car15g00851 162688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00851 183 Pfam Uncharacterized protein family UPF0016 147 182 IPR001727 -
Car15g00851 183 Pfam Uncharacterized protein family UPF0016 11 84 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00851 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - csv:101209565 321.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00916 Car-Chr12:9183245 Car15g00851 Car-Chr15:4950849 2.19E-21 dispersed
Car15g00851 Car-Chr15:4950849 Car05g00711 Car-Chr5:4892405 1.56E-38 dispersed
Car15g00851 Car-Chr15:4950849 Car04g02001 Car-Chr4:15525202 3.67E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g276 . Blo16g01056 . Bda11g01139 Bpe13g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0461 Cone9ag0473 . . . . . . . Bda11g01139 . . . Bma06g00766 . . . . . . Car15g00851 Cpe13g00410 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00851 Car_Chr15 FPKM 9.924091 10.999948 9.123133 7.104297 5.157142 4.022259 6.012411 17.412228 20.007269 23.074635