Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00859 ATGACGGTGAAAAACGAGAATCTCGACAAGGACAAGTTGCTGGAGCAGTTTCTGAGAATCGGATTGGATGAGCGTACTGCACGAAACACCGTTGCCAACAATAAGGTCACTGCCAATCTCAATGCCGTTATTCATGAGGCTGGCGTGCTTGAAGGATGCGATAAGGCTATTGGAAATCTATTGTATACTGTTGCGACAAAGTATCCTACAAATGCACTTGTTCATCGACCAATATTGCTGAAATATGTTACCTCAAATAAGATAAAGATGCCGGCTCAATTGGAAGCGGCATTTTCATTTTTTTCTGCTGCAGGCCAAGAAGATATTAAATTAAATGAATTTGAAGATAAATGTGGTGTTGGTGTAGAAGTTTCAGTTGAAGAAATTGAGAAGACTGTGAATGAGGTTTTTGAAGAACATAAAAATGAAATTCTGGAGCAACGTTATCGAACGAATGTGGGTGACTTGTTTGGGCAGGTACGGAAGAAGCATCCTTGGGCTGATCCAAAGATTGTAAAGCAATATATTGATTCCAAATTATTTGAATTACTCGGTGAAAGGACTGCGGCAGATAATGAAAAGATAGTGAAAAAGAAAAAAGAGAAGCCTGCTAAAGTAGACGATAAACCTGTTGCTATTGTTTCAGTGGAACAGCCTCCATCTGAGGAAGATCTTAACCCATATTTAATATTCCCCCGGCCAGAGGATAATTATAAGGTTCATACTGAAGTATTTTTCAGTAATGGAACTATCCTAAGATGTTGCAACACCAAGGAGCTGCTTGAAAAGCACCTAAAAGCAACAGGGGGAAGAGTTTTGACTCGCTTTCCTCCTGAACCAAATGGTTATCTTCATATTGGTCATGCCAAGGCAATGTTTGTTGATTTTGGCCTGGCAAAAGAGCGAGGTGGAGGTTGTTATTTGAGGTATGACGACACGAATCCAGAAGCTGAGAAGAAGGAATATATTGATCATATAGAAGAGATTGTCAAGTGGATGGGTTGGGAGCCTTTCAAGATTACTTATACTAGTGATTACTTCCAAGATCTGTATGAGTTAGCTGTGGAGCTCATACGTAGGGGTCATGCTTATGTGGATCACCAGACTCCTGACGAAATAAAGGAGTACAGAGAGAAAAAGATGAATAGTCCCTGGAGGGATAGGCCTGTGGCTGAGTCATTGAAATTGTTTGACGAAATGAAGCAAGGTCTGATTGAGGAAGGCAAGGCGACTCTTAGAATGAAACAAGACATGCAGAGTGATAATTTTAATATGTATGATCTTATTGCATATCGTATTAAGTTTACTCCTCATCCACATGCTGGAGACAAGTGGTGTATTTATCCAAGCTACGATTATGCGCACTGCACTGTGGATTCTCTTGAGAATATAACACATTCGCTGTGTACCTTGGAATTTGAAACACGTCGTGCTTCGTACTACTGGTTATTGCATGCACTGGACCTTTATCAACCATATGTGTGGGAATATTCTCGCCTCAATGTTTCAAATAATGTGTTGTCTAAGCGTAAGTTAAATCGACTGGTGACCGAAAAATGGGTTGATGGTTGGGATGATCCTCGCCTATTGACACTTGCTGGTCTTAGGCGCAGAGGTGTTACATCAACTGCAATTAATGCGTTTGTTCGAGGAATGGGAATTACAAGAAGTGACTGTTCTTTGATTCAGTTTAATCGTCTTGAATATCACATTAGAGAAGAGCTAAATAAAACTGCTGCACGAGCAATGGTTGTCTTGCAGCCACTTAAGGTTGTTATTACAAACTTAGAAAATGGATCAATTTTGGATCTTGATGCCAAGAAATGGCCTGAAGCTCAAGCAGATGAGGCATCGGCCTTTTATAAGGTTCCCTTTTCCAATATTGTGTACATAGAACGATCAGATTTCCGGTTGAAAGATTCAAAAGATTACTATGGTCTTGCACCTGGAAAGTCTGTCCTTCTGAGGTATGCATATCCTATTAAATGTACGGATGTTATCCTTGCGGATGATAAGGAAACTGTACTTGAGATTCGAGCAGAATATGATGCTTCCAAGAAATCAAAGCCAAAGGGGGTCCTACATTGGGTTGCACAACCTTCTCCAGGAGTTAATCCACTCAATGTAGAAGTTAGATTGTTTGACAAGCTATTCCTTTCTGAGAACCCTGCTGAACTTGATGATTGGCTTGCTGATTTGAACCCACATTCTAAAGTAGTCATCCCAAGTGCATATGCTGTTCCAGAACTTAGGAATGCTGTTGTTGGGGACACATTCCAATTTGAAAGGCTTGGGTATTTTGCGGTTGATAAAGACTCAACTCCTGAGAAACTCGTATTCAATCGCACAGTCACGCTGAGAGATAGCTATAAGAGCAGCAAGTGA 2385 40.63 MTVKNENLDKDKLLEQFLRIGLDERTARNTVANNKVTANLNAVIHEAGVLEGCDKAIGNLLYTVATKYPTNALVHRPILLKYVTSNKIKMPAQLEAAFSFFSAAGQEDIKLNEFEDKCGVGVEVSVEEIEKTVNEVFEEHKNEILEQRYRTNVGDLFGQVRKKHPWADPKIVKQYIDSKLFELLGERTAADNEKIVKKKKEKPAKVDDKPVAIVSVEQPPSEEDLNPYLIFPRPEDNYKVHTEVFFSNGTILRCCNTKELLEKHLKATGGRVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVKWMGWEPFKITYTSDYFQDLYELAVELIRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPVAESLKLFDEMKQGLIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCTVDSLENITHSLCTLEFETRRASYYWLLHALDLYQPYVWEYSRLNVSNNVLSKRKLNRLVTEKWVDGWDDPRLLTLAGLRRRGVTSTAINAFVRGMGITRSDCSLIQFNRLEYHIREELNKTAARAMVVLQPLKVVITNLENGSILDLDAKKWPEAQADEASAFYKVPFSNIVYIERSDFRLKDSKDYYGLAPGKSVLLRYAYPIKCTDVILADDKETVLEIRAEYDASKKSKPKGVLHWVAQPSPGVNPLNVEVRLFDKLFLSENPAELDDWLADLNPHSKVVIPSAYAVPELRNAVVGDTFQFERLGYFAVDKDSTPEKLVFNRTVTLRDSYKSSK 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4995439 5008598 - Carg26886-RA Car15g00859 162696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00859 794 Pfam tRNA synthetases class I (E and Q), catalytic domain 272 576 IPR020058 GO:0004812|GO:0005524|GO:0043039
Car15g00859 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Car15g00859 794 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 579 770 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Car15g00859 794 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 278 289 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car15g00859 794 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 249 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00859 K01886 QARS, glnS; glutaminyl-tRNA synthetase [EC:6.1.1.18] - csv:101210547 1535.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g01049 Car-Chr10:10781528 Car15g00859 Car-Chr15:4995439 2.41E-62 dispersed
Car15g00859 Car-Chr15:4995439 Car19g00634 Car-Chr19:7707363 9.26E-06 dispersed
Car15g00859 Car-Chr15:4995439 Car11g00986 Car-Chr11:6666026 9.32E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00859 Car_Chr15 FPKM 8.215102 9.299243 8.911142 9.958512 10.446097 10.675255 10.514883 12.201639 11.250572 11.479285