Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00862 ATGTTGCCGTGTTTGAAGTGGGGGAATCAGAAGCACTTGAGGTGCATGAAGGTGAATTCTAATGGTGTACAGGTCTCCGGCGTGAATCGACAATCTCACTCCTCGAGATCGGAGGAGTCTACGGAGAGTAAGAGTCGGGAATCGGGCTCAGAGATGCGGATGTTCTTCAAGGATTTGGAGATGAGACCGAAGGTTTCGAAATCGATAATCAAGAAAACCGACGACGTTGGGATCGAGGCGGTCAGAGAGAAGCTTATGTTTGATCTGAAGACGGCGGCCGATAAAATGAAAGAGGCGATTTTAAGTAAGGAGGCAGTGGTGGCCGAAGAAGAGGCGGAAGAGAAGAACGATTCTGCCGGAATGGAAGAGACGCCGGCGGCGGTTGCGTTATCGATGGTGGAGACCAGACCTTGGAATCTAAGGACGAGGAGAGCCGCTTGTAAGGCTCCGAATGTTGACGGTGGTGCGAGTAAGAATTTGAAGCTTGATGAGAAGAAATCGAATTCCAATTCCCCGTTGCGTAGTGATGGTGGCGCCAAGTCACCTAGGTTGAAAATTGGGACGGAGAAGAAGAAGAAGAAGGTGAAATTGGTAGTGCCGCTCTCGAAGAGAGAGATCGATGAAGATTTCATGGAAATGGTGGGACTCAGACCACCGAGGCGGCCCAAGAAGAGGACCAGAATCGTACAAAAGCAATTAGATACGCTTTTTCCTGGGTTATGGCTGTCGGAGATCACAGCTGATTTGTATAAGGTCCCTGAATTACCTGAAAACGGCAAGGTGATGAAGGTTTAA 795 49.18 MLPCLKWGNQKHLRCMKVNSNGVQVSGVNRQSHSSRSEESTESKSRESGSEMRMFFKDLEMRPKVSKSIIKKTDDVGIEAVREKLMFDLKTAADKMKEAILSKEAVVAEEEAEEKNDSAGMEETPAAVALSMVETRPWNLRTRRAACKAPNVDGGASKNLKLDEKKSNSNSPLRSDGGAKSPRLKIGTEKKKKKVKLVVPLSKREIDEDFMEMVGLRPPRRPKKRTRIVQKQLDTLFPGLWLSEITADLYKVPELPENGKVMKV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5054941 5056419 + Carg24932-RA Car15g00862 162699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00862 264 MobiDBLite consensus disorder prediction 35 53 - -
Car15g00862 264 Coils Coil 93 113 - -
Car15g00862 264 Pfam Protein of unknown function (DUF1639) 201 250 IPR012438 -
Car15g00862 264 MobiDBLite consensus disorder prediction 149 187 - -
Car15g00862 264 MobiDBLite consensus disorder prediction 24 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00862 - - - csv:101205564 404.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00289 Car-Chr10:1390003 Car15g00862 Car-Chr15:5054941 1.22E-30 dispersed
Car11g00257 Car-Chr11:1422055 Car15g00862 Car-Chr15:5054941 2.70E-24 dispersed
Car15g00862 Car-Chr15:5054941 Car15g01013 Car-Chr15:7910146 1.94E-22 dispersed
Car15g00862 Car-Chr15:5054941 Car18g00930 Car-Chr18:10032022 2.14E-46 wgd
Car15g00862 Car-Chr15:5054941 Car04g02008 Car-Chr4:15746066 4.56E-147 wgd
Car15g00862 Car-Chr15:5054941 Car04g01553 Car-Chr4:9024687 1.11E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g330 . . Bda01g02068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0819 Cone19ag0825 . Cone9ag0452 . . . . . . . . . Bpe02g02259 . . . . Cmo15g00959 . Cma15g00920 . Car15g00862 Cpe13g00400 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004927 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00862 Car_Chr15 FPKM 13.514688 14.293893 20.629463 22.295527 18.22883 16.599487 18.018812 9.579807 9.880667 10.422362