Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g00866 | ATGAGTGGCGGTGGCAGTAGCACTTCTCGAAGCACTAGGGATTTGATCTGCCATGCCGGTGCTGGTGCTGCTGCAGGTGCTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTGTCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGACTGTACCGTGGCCTTTCACCAACAATATTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCATACTTCATTCAGATGGGGATGATGGTCATCAACTCTCGTTCGGCGCAAATATGGTTGCTGCTGCTGGGGCTGGGGGATCTACTGCCATTGCAACAAATCCTTTATGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAAGAAGGAATTCGCGGGCTTTACAGTGGTATCCTCCCTTCATTGGTTGGGATAAGTCATGTTGCCATTCAATTTCCAGCATACGAAAAGCTCAAATCATATATGGCAAAAAGAGATAACACAACCATTGAAAAGCTAACTCCGGGACATTTAGCTATTGCCTCGTCATTGTCGAAAGTTATGGCCTCGGTAACGACTTACCCACATGAGGTAGTTCGTTCCAGGATGCAAGAGCAAGGCCAAGCCAGAAATGTTGCTCCTCAATACTCCGGCGTACTGGACTGTATCAAAAAGGTTTTTCAAAAGGAAGGTCTTCCCGGTTTTTACAGGGGTTGTGCGACAAATCTGTTACGAACAACTCCATCCGCCGTAATAACTTTCACCAGCTATGAGATGATACATAGGTTTCTACTGCAATTTATACCTCAAGGCGAGGAGAAACCTTCCCCCCATCTGAATTCGAATAGCAATAGCCATGTGAAGCCCCAAAAGGCGAACCGAGACGACTCGAAGGAAGAGAGTGATTCCGGCTTACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAGCATCTAGACACTGA | 1113 | 46.45 | MSGGGSSTSRSTRDLICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIVTSLQDIMRSEGFRGLYRGLSPTILALLPNWAVYFTVYEHLKGILHSDGDDGHQLSFGANMVAAAGAGGSTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGILPSLVGISHVAIQFPAYEKLKSYMAKRDNTTIEKLTPGHLAIASSLSKVMASVTTYPHEVVRSRMQEQGQARNVAPQYSGVLDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQFIPQGEEKPSPHLNSNSNSHVKPQKANRDDSKEESDSGLQQSQSQPSKQTRIPLGNKEQLASRH | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 5109807 | 5114410 | + | Carg24928-RA | Car15g00866 | 162703 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g00866 | 370 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 113 | 201 | IPR018108 | - | |
| Car15g00866 | 370 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 13 | 102 | IPR018108 | - | |
| Car15g00866 | 370 | MobiDBLite | consensus disorder prediction | 343 | 362 | - | - | |
| Car15g00866 | 370 | Pfam | Mitochondrial carrier protein | 215 | 305 | IPR018108 | - | |
| Car15g00866 | 370 | Pfam | Mitochondrial carrier protein | 18 | 104 | IPR018108 | - | |
| Car15g00866 | 370 | Pfam | Mitochondrial carrier protein | 112 | 205 | IPR018108 | - | |
| Car15g00866 | 370 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 213 | 303 | IPR018108 | - | |
| Car15g00866 | 370 | MobiDBLite | consensus disorder prediction | 314 | 370 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01054 | Car-Chr4:6043309 | Car15g00866 | Car-Chr15:5109807 | 8.02E-27 | dispersed | |
| Car05g01031 | Car-Chr5:9820968 | Car15g00866 | Car-Chr15:5109807 | 5.20E-118 | dispersed | |
| Car15g00866 | Car-Chr15:5109807 | Car05g00330 | Car-Chr5:1795038 | 4.98E-40 | dispersed | |
| Car17g00233 | Car-Chr17:1440743 | Car15g00866 | Car-Chr15:5109807 | 1.05E-07 | dispersed | |
| Car15g00866 | Car-Chr15:5109807 | Car17g01010 | Car-Chr17:8030483 | 1.65E-138 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g00866 | K15115 | - | csv:101216902 | 619.387 |