Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00875 ATGCACAAGAGCACTACTTCTGCGTCTAATACTATTGCTGCTGGGACCACTATGTCATCATCGTCGCAACTGAAATCGCAGCTTCAAACAAACAACGTTTATGCTTCCCTCTATAATTCCTCAATCTTTGCTCCAAAGCAATCCGTGCCTGTCTCTCTTCCATCGACTCTCTATGGTGACTCTACTCACACGGATTCAATCTCCGCTTCAAAATCGATAAACAACCACCTCTATCAAACCTGCGTCGTTCAAGATCACCAAGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTTAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGTCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCAAACTCCTCCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCAGAGAAAGGGGCAAGCAGTTCGACATGGGAAGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCAGCAGCCAGGGCGGAAAGGTCCGCGTCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAGGTTACGAACAAATGGTGTCTTGTTCTGAAAATACAGCAGAAGGTGTACGTTCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAGCTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGTAACAAATGGCAGGAAACAGGTAGCTGCCCTTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGGTACAAGACGGAGGTCTGCCGTATGGTCCTTGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGCCGCTCAAGCCCACCTGCAGGACCGCCCCCAAGCTCGACAGGTGA 1077 51.72 MHKSTTSASNTIAAGTTMSSSSQLKSQLQTNNVYASLYNSSIFAPKQSVPVSLPSTLYGDSTHTDSISASKSINNHLYQTCVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQTPPFNFVEGFRGLSVAEKGASSSTWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGSSQGGKVRVSSRPRTASPVKVTNKWCLVLKIQQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTAPKLDR 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5176089 5178287 + Carg24919-RA Car15g00875 162712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00875 358 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Car15g00875 358 MobiDBLite consensus disorder prediction 1 23 - -
Car15g00875 358 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Car15g00875 358 Coils Coil 100 120 - -
Car15g00875 358 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00875 K18753 ZFP36L; butyrate response factor - csv:101203274 627.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01976 Car-Chr4:14234712 Car15g00875 Car-Chr15:5176089 1.30E-08 dispersed
Car04g01979 Car-Chr4:14314478 Car15g00875 Car-Chr15:5176089 1.66E-08 dispersed
Car04g02874 Car-Chr4:21721146 Car15g00875 Car-Chr15:5176089 2.54E-54 dispersed
Car15g00875 Car-Chr15:5176089 Car02g01380 Car-Chr2:9095410 7.42E-07 dispersed
Car15g00875 Car-Chr15:5176089 Car12g01196 Car-Chr12:11394259 3.06E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4845 PF00642 zf-CCCH 5.60E-12 CL0537 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00875 Car_Chr15 FPKM 0.959544 0.591931 3.190605 2.760194 1.721664 2.393425 1.996623 1.041355 1.371592 1.30343