Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00884 ATGGCGTTTTTACCCATCAACTCATCCAGCTTGGATCTCTCGATATCGATGCCCGGCTTTGCTTCTTCCCCGCCTCGTCCTTCAGCGAGAGTGAGACGAGGAGTTGATGCAGCGAAAGAATTGGACATGAACCGGGTACCGGATGTAGGAGAAGCCGCGGAGGAAGAACAAGCGGTGGCGGCGAGGACGGAGGAGGAAGAGGAGAGCTGCAGCATTAACAATGGAGGTGGTCAGCCAAAGAAGAAGCTTAGTCTATCAAAACATCAGTCTCGTCTCCTTGAAGATATCTTCAGGCATAACCATTCATTAAACCCTAAGCAAAAGGAAGCCTTGGCTATGGCACTTCAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGATGGAATGCCAGTATTTAAGGAGGTGGTTTGGCTCATTAACGGAGCAAAACCGCCGGCTGCGGCGGGAACTGGAGGAGCTCAGAGCTACTAAGGTTGCTGTCCCAGCCGTCGTCTCAAGCCACGGCCGACAGCCACCCCTGCCGGTGTCCACTATAACCATGTGTCCACAGTGCAAGCGCGTAACCGCTGCCACTATAACATCTAGTCCGGCTGCAGCCACCCAGACCGCCATTGCCACCACTGCAACGCCATCGAAGGCGGTTCGGTCAGCCCTGAAGTTGCAGCAGCCGTCGCAAGCTTGA 720 54.31 MAFLPINSSSLDLSISMPGFASSPPRPSARVRRGVDAAKELDMNRVPDVGEAAEEEQAVAARTEEEEESCSINNGGGQPKKKLSLSKHQSRLLEDIFRHNHSLNPKQKEALAMALQLKPRQVEVWFQNRRARSKLKQTEMECQYLRRWFGSLTEQNRRLRRELEELRATKVAVPAVVSSHGRQPPLPVSTITMCPQCKRVTAATITSSPAAATQTAIATTATPSKAVRSALKLQQPSQA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5258409 5260863 + Carg24910-RA Car15g00884 162721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00884 239 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Car15g00884 239 Pfam Homeobox associated leucine zipper 136 169 IPR003106 GO:0006355|GO:0043565
Car15g00884 239 MobiDBLite consensus disorder prediction 32 69 - -
Car15g00884 239 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Car15g00884 239 MobiDBLite consensus disorder prediction 1 85 - -
Car15g00884 239 Coils Coil 149 169 - -
Car15g00884 239 Pfam Homeodomain 80 134 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00884 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101206325 256.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02028 Car15g00884 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00045 Car-Chr4:243721 Car15g00884 Car-Chr15:5258409 3.65E-71 dispersed
Car15g00884 Car-Chr15:5258409 Car06g00089 Car-Chr6:617525 2.37E-47 dispersed
Car15g00884 Car-Chr15:5258409 Car04g02028 Car-Chr4:16323750 1.38E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g421 . . . . . . . . . . . Cma04g00039 . . Sed06g0211 . . Bhi07g00288 Tan04g1613 Cmetu09g0102 Lac13g1501 Hepe01g0469 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02089 Cma15g00941 Car04g02028 Car15g00884 . . . . . . . . . . . . . . . . . Csa05g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003033 0 4 0 1 1 2 3 2 2 1 2 2 3 2 2 1 2 2 2 2 2 1 2 2 2 2 1 2 2 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4846 PF00046 Homeodomain 1.60E-16 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00884 Car_Chr15 FPKM 46.741589 56.617527 11.412807 10.654693 29.1835 28.268063 29.295591 40.275967 45.981979 43.439644