Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00885 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCAGATGTTGCTTTGATCGTCTTCTCCACCAAAGGCAAGCTCTTTGAGTACTCCTCTCATTCCAGCATGGAGAAAATCTTAGAAAAATATGAAAGATATTCTTATGCTGAGAGACCATTGGCCCCAAATCCAGATTCTAAATCACAGGCAAGTTGGTGTCAGGAGTATCCAAAGCTTGCAGCCAGATTGGAGATTGTGCAGAAGAATTTAAGGCATTATTTGGGAGAAGAGCTTGACCCTTTGAGTTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCCAGAAAGGTAAAAGAGAATGAGACGGTTTGGGTTGAACGAGGACACTGCGAGCTCACAAATTTAGATCATAATCACCACATTTTAGCAACGCCACCACCACTTCCTTCTTTGTCAATTGGAGTAAACTGCCATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAACCCTCATAATTAA 660 43.18 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSHSSMEKILEKYERYSYAERPLAPNPDSKSQASWCQEYPKLAARLEIVQKNLRHYLGEELDPLSLRELQSLEQQLDSSLKRIRARKVKENETVWVERGHCELTNLDHNHHILATPPPLPSLSIGVNCHGRGSDEDETRPTSTNNIQIPAWMLSHVTENPHN 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5275713 5279569 - Carg24909-RA Car15g00885 162722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00885 219 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g00885 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car15g00885 219 Pfam K-box region 86 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car15g00885 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car15g00885 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car15g00885 219 Coils Coil 123 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00885 Car-Chr15:5275713 Car18g00016 Car-Chr18:72368 2.91E-74 dispersed
Car15g00885 Car-Chr15:5275713 Car12g00107 Car-Chr12:570579 1.24E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4847 PF01486 K-box 2.10E-19 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00885 K09264 - csv:101218674 335.109