Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00886 ATGATGGGATTTCAAGGCCGATTGTCTAATTTCGGACCTGGAGATTTGTATTCGGTTCAATCCTCCAGAGGTCCGACTCCCAGGCCGTCCAATTTCGAGGAGAACTCTGCCGTTCAGCCTCAGACCGCATCCCCGAGGTTCGGGTTTTACCCCGCTCAAACTGTGCCCTCCTCTTATCCGGCTCCCAACCCGGAATTCACCAAAACTGCTAAAATCCCTCAGCCACCGCCTCCTCCTCCGCCGCCGCAACCGCAGAATCAAAAAGCGAACCATGACGCCAAGGAGCTTCACATGTTTGTTTGGAGCTCGAGCGCTTCTCCAGTCTCTGAAGGCCGCGGTGGGCTCAACAACCTCGCCGGGAATGAGCTCGCTGGAGCCGAGCAATCTGGACGGTCCGATCAAGGCGCCAAGGAAATACGGATGCTCGTGGCCGATCATCAACAACAAAACGGGGAAAACAAAGGTATATTTATGGGACTACAACCAAAGATGATAGCATGTGGGAACTCTGTTGCTGCTTTTGCGATGGCCATTAGATTCCTTACTGGGCCAGCCGTTATGGCCATCGCTTCCATCGCTATTGGCTTGCGTGGAACCCTCCTCCGTGTTGCTATTGTGCAGGCGGCACTGCCCCAAGGAATTGTACCCTTCGTGTTTGCTAAAGAGTACAACGTTCATCCAGCAATTCTGAGCACTGGGGTGATCTTTGGCATGCTCATAGCTCTGCCCATTACTTTACTCTACTATGTTCTGCTGGGTCTGTAA 765 52.94 MMGFQGRLSNFGPGDLYSVQSSRGPTPRPSNFEENSAVQPQTASPRFGFYPAQTVPSSYPAPNPEFTKTAKIPQPPPPPPPPQPQNQKANHDAKELHMFVWSSSASPVSEGRGGLNNLAGNELAGAEQSGRSDQGAKEIRMLVADHQQQNGENKGIFMGLQPKMIACGNSVAAFAMAIRFLTGPAVMAIASIAIGLRGTLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLLYYVLLGL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5330779 5333489 + Carg26358-RA Car15g00886 162723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00886 254 MobiDBLite consensus disorder prediction 14 48 - -
Car15g00886 254 MobiDBLite consensus disorder prediction 1 91 - -
Car15g00886 254 Pfam Membrane transport protein 155 249 IPR004776 GO:0016021|GO:0055085
Car15g00886 254 MobiDBLite consensus disorder prediction 69 86 - -
Car15g00886 254 MobiDBLite consensus disorder prediction 105 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00886 K13947 PIN; auxin efflux carrier family protein - csv:101214189 264.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00875 Car-Chr11:5443709 Car15g00886 Car-Chr15:5330779 4.63E-30 dispersed
Car14g00548 Car-Chr14:3004623 Car15g00886 Car-Chr15:5330779 2.81E-12 dispersed
Car04g00943 Car-Chr4:5434822 Car15g00886 Car-Chr15:5330779 3.45E-52 transposed
Car05g00713 Car-Chr5:4907389 Car15g00886 Car-Chr15:5330779 5.06E-14 transposed
Car15g00886 Car-Chr15:5330779 Car04g02029 Car-Chr4:16357712 2.25E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g419 . . . . . . Bma14g01596 . . . . . . . . . . . . . . . . . Cla07g00584 Cam07g0612 Cec07g0679 Cco07g0660 Clacu07g0621 Cmu07g0646 Cre07g0991 . . . . Lsi04g01128 . . . . Blo11g00730 . . Bpe11g01605 . . . . Cmo04g02192 Cmo15g00981 . Cma15g00942 . Car15g00886 . . Bhi12g00872 . . . Hepe02g2672 . Lcy10g1449 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003927 0 2 0 0 0 2 3 2 3 1 2 2 1 1 2 1 3 1 1 3 1 1 1 1 1 1 1 1 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00886 Car_Chr15 FPKM 11.349463 14.082109 14.187518 10.119671 12.27555 7.542498 8.029726 13.300876 9.372941 12.21688