Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00890 ATGTCCCTCCATCTCAGTTATCCACTCCCGATAATCCCCCGCCGGAATGGATTCCGGACAAAATCTCAGCCACCGGCGGCAAAGTCGGTCGTCTCATGCTCCGCTATCAACCGTTACTCCGCCGGATGCAAAAGGCAATATACCAGTGTGATGATAGTCCCGACGGGCGTAGGAGCCGCCATTGGTGGATACGCAGGTGACGCTCTTCCGGTTGCTCGTGCCCTTGCCTCCGTCGTTGATTGCCTTATAACTCATCCTAACGTGCTTAATGCAGCTATGCTTTACTGGCCTATGTCCAATGTGCTGTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTACAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGGAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGGGCCTCTCTTGGGTTGCCTGTGATGGAATATGTTGTCACAGAGACACCTTTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATTAGACACCCTGCTTCACTGCTGAGAGCTGTGCAGGCATTGATGAAACGATCAAAGGTGAATGCAGTTGCAGTTGTTGGACGATTCCCAGATGATGATGTTGAAGAGACAGATAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATCAGCCATCTAGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTATCTCCTACTCCCATATGCAAATCTCTATCTCCAAAATCAGCAGCAGAGGAGGACTGCATATTGGCAAATGATGTCGATAGTGTCATTGTACCTATAGATGCATGTGGAGGGGATGGCGCCCTTGCCTTTGCCAGAAGCAAACAGTACAAGCCACTTATTATTGCGGTTGAGGAAAATGAAACAGTTCTCAGTGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTTTCAAATTATTGGGAAGCCATAGGTGTTGTTGCAGCTCACAAGGCGGGAATAGATCCTTATTCCCTGCGAAGAAATAGGATCAACAACATTCATTCCATTTCCATTACATCTCCTAATGGTCACGCAGATCTATTGGATTCACAAAGTTCCATACGTATTCTACTCCTACTCACCAGCGAAGTCGTTGGTGATGGCCGGCGGCGTGCTTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTTTGATGTCAGGGAGGTCCATCACCGGAGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATTGCGCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTTTGTGGTGGCTTCCGGGACAAGTTTGAGGCATTGACCGACTCTATTGCTTCTTCTTCTTCTTGTTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCAGCAAAACGCCTTCTGTACGCCGCTATGACTTTCTCTGTATACGACGATGACGAGGTTTCTCCGACTTCGACTAATTGGAAAATTAACAGAGCTGGGTGTGGAGCTTCCATTAATGAGGGAGGTACCAAAAAATTGGTTCTGCAATTCCATTACGTGACAACCAGACTAGAAACTGCACTCTCAAATCTGCCATTCGACCACTTTTGTGTAGCAGACGAAGTACAAGAACAGGTTGATTTGGTCAGAGCTCAGCTGATGAGAGCATCAAAGAACTATGAGTCTATGTCTGACCCCATACATAAGAAGCTTGAAGCTACAGGTTCTGTAAAAGCCATGATCTTTCATGATGTCAAGACCATGTCTAGTGTTGATGATGGAGATCCAGACTCTCAGCATCGTCCTCCGAACCGCGACGATCTGATCTGTTTCGATTCGGATGAGCTAAAGAACTCGAATTCATGTTTCAACGAGTGTTCAAGTGTTCATTCTGAAATGGAAGATGTTCTATCCATCAAGAGCCAAGATGAAGTTGGGAAGCTTGATGTAATTGAAATTCCTGAGAATTTCTTTTGTCCCATTTCCCTTGAATTAATGATCGATCCTGTCATCATCTCGACCGGACAGACATATGAAAGATCCAACATACAAAAATGGATAGACAGAGGAAATACAACATGTCCAAAGACTCAAGAGCAGCTTCAATCTCTGATCCTCACTCCAAATTTTGCTATGAGAAATTTGATCTCAGAATGGTGTGGAGAACACAATGTTAATTTAGAGAAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGGTTGCCGAAGGACGTTACCGATCAAAACGTTGGTTCGACACCTTTCTTTGGGGTCCGTACAGGAGCAGAAGGCGGCGGTGACCGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAAAAGCCGGAGCAATCCCACAGCTGGTTGTCCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCATGCATTTTGAACCTTTCACTTCATGAGCCAAACAAGAGACTTATAATGCTCCATGGTGCATTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGGGACGATTTACAGCTTGTCGTTAGCCGACGAAAACAAGGCGATAATCGGGGCGTCGGGCGTGATCCCGGACCTTATAGAAATCCTCCAGATTGGGAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAAGGCAGAGCTTTCAGGGCTGGGATTGTCAAACTATTATTGAAAATGCTCTCTGATTCAAATGGCACATTGGTTGATGACGCTCTCTATATAATGTCAGTTCTTTGCAGCCATCCGGAGGCCAAGGCTGCAATGGGGAATGCCAATTCATTGCTTGTTTTGACCAATGTTCTTAAGAAGGGGTCGTCTCGCAGCAGGGAAAATGCAGTGGCAGTTCTGCTTGCATTGTGTAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGGCTTGGCGCGGCGGTGCCGTTGATGAAACTTTCCAAGGATGGCACGGAGAGAGCGAAACGGAAGGCTGCTTCATTGTTGGATCAACTCAGAAAATCATGA 3150 46.44 MSLHLSYPLPIIPRRNGFRTKSQPPAAKSVVSCSAINRYSAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMSNVLYVEGYALDRFAEGSWALQPVHQNRVGLVLDAGMEEELRIRHLQVADAARASLGLPVMEYVVTETPLMVEKWIDPKTGQSTGRIRHPASLLRAVQALMKRSKVNAVAVVGRFPDDDVEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPICKSLSPKSAAEEDCILANDVDSVIVPIDACGGDGALAFARSKQYKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIGVVAAHKAGIDPYSLRRNRINNIHSISITSPNGHADLLDSQSSIRILLLLTSEVVGDGRRRALALQLLDLVRDFVLMSGRSITGAGDVMKKDCTDLIRRIALLIHLAEEITNFCGGFRDKFEALTDSIASSSSCLDCLSEVVGAIQAAKRLLYAAMTFSVYDDDEVSPTSTNWKINRAGCGASINEGGTKKLVLQFHYVTTRLETALSNLPFDHFCVADEVQEQVDLVRAQLMRASKNYESMSDPIHKKLEATGSVKAMIFHDVKTMSSVDDGDPDSQHRPPNRDDLICFDSDELKNSNSCFNECSSVHSEMEDVLSIKSQDEVGKLDVIEIPENFFCPISLELMIDPVIISTGQTYERSNIQKWIDRGNTTCPKTQEQLQSLILTPNFAMRNLISEWCGEHNVNLEKGLTNRKLKKYRSFEDGCRRTLPIKTLVRHLSLGSVQEQKAAVTEIRQLSKSSSDHRVEIAKAGAIPQLVVLLTSEDVATQENAISCILNLSLHEPNKRLIMLHGAFSYISQVLKFGSMEGRECAAGTIYSLSLADENKAIIGASGVIPDLIEILQIGSPRGQKDAAGALLNLCMYQGNKGRAFRAGIVKLLLKMLSDSNGTLVDDALYIMSVLCSHPEAKAAMGNANSLLVLTNVLKKGSSRSRENAVAVLLALCKGDWEKLEWLTRLGAAVPLMKLSKDGTERAKRKAASLLDQLRKS 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5383216 5394198 - Carg26354-RA Car15g00890 162727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00890 1049 Pfam Armadillo/beta-catenin-like repeat 802 841 IPR000225 GO:0005515
Car15g00890 1049 Pfam Armadillo/beta-catenin-like repeat 885 923 IPR000225 GO:0005515
Car15g00890 1049 Pfam Protein of unknown function (DUF3326) 48 275 IPR021763 -
Car15g00890 1049 Pfam Protein of unknown function (DUF3326) 275 358 IPR021763 -
Car15g00890 1049 Coils Coil 560 580 - -
Car15g00890 1049 ProSiteProfiles U-box domain profile. 673 747 IPR003613 GO:0004842|GO:0016567
Car15g00890 1049 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 813 855 IPR000225 GO:0005515
Car15g00890 1049 Pfam U-box domain 674 745 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00053 Car-Chr4:283576 Car15g00890 Car-Chr15:5383216 0 dispersed
Car15g00890 Car-Chr15:5383216 Car18g00828 Car-Chr18:9305016 1.14E-118 dispersed
Car15g00890 Car-Chr15:5383216 Car04g00936 Car-Chr4:5378929 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00890 - - cmax:111489474 1207.2