Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00899 ATGGGGAATTATATTTCTTGCTCCTTGGCCACGCCGTTGATCAAGAATTTCAAGGCGGTTAGGGTCGTGCTTCCAGGCGGCGAGGTCCGTCAGTTCCGGGAGTCGGTGAACGCGGCGGAGCTAATGCTCGAATGTCCTACTTACTTTCTCGCCAACGCTCAGTCTCTCCACATCGGCCGCAGATTCTCCGCACTCGCTGCCGACGAGGAATTGGAGTTTGGTAACGTTTATCTCATGTTTCCGATGAAGAGAGTTAACTCCGTTGTCACGGCGGCGGATTTAGCCACCTTCTTCATGGCGGCCAACTCTGCGGCCAGGCGGATTTCGGCCGCTAAGGTTAGGGTTATACATGATAATCGGAATCGAGAATCAGGTGAATCGGAAGCGGAATCGAGGCCGAGAATTAGCGATGAAAATAACGGACCGAGATTGAGCTTGGAAGGAATCGAGGGATTTCCGATGCATCGATTGTCAGTTTGCCGGTCCAGGAAGCCATTGTTGGAGACGATTAAAGAAGAGCATATTAGGGGAAGATAG 537 51.77 MGNYISCSLATPLIKNFKAVRVVLPGGEVRQFRESVNAAELMLECPTYFLANAQSLHIGRRFSALAADEELEFGNVYLMFPMKRVNSVVTAADLATFFMAANSAARRISAAKVRVIHDNRNRESGESEAESRPRISDENNGPRLSLEGIEGFPMHRLSVCRSRKPLLETIKEEHIRGR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5460898 5461434 - Carg26345-RA Car15g00899 162736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00899 178 Pfam PADRE domain 1 172 IPR025322 -
Car15g00899 178 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 175 - -
Car15g00899 178 PANTHER DUF4228 DOMAIN PROTEIN 1 175 - -
Car15g00899 178 MobiDBLite consensus disorder prediction 119 137 - -
Car15g00899 178 MobiDBLite consensus disorder prediction 119 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00899 - - - csv:101213469 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02221 Car-Chr4:18037617 Car15g00899 Car-Chr15:5460898 5.75E-50 dispersed
Car15g00685 Car-Chr15:3815230 Car15g00899 Car-Chr15:5460898 2.14E-51 dispersed
Car15g00899 Car-Chr15:5460898 Car07g00727 Car-Chr7:3739746 1.72E-08 dispersed
Car17g00990 Car-Chr17:7925527 Car15g00899 Car-Chr15:5460898 1.24E-08 transposed
Car15g00899 Car-Chr15:5460898 Car04g02043 Car-Chr4:16621830 2.86E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0786 Cone19ag0790 . . . . . . . . . . . . . . . . Cmo15g00994 . Cma15g00954 . Car15g00899 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009169 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00899 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0