Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00904 ATGTTGCTGTACAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCGTCAATGTGCTCGGCAGCGCTGGGCCGATTCGATTTATTGTGAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACAGCATTGAAATCCTACGCGCGTGAGGGCCGGCTTCCGATTCTTGGGTCCGATCTCAGGGATTTCCAGCTTTACTGCCCAATTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGATCCCGGAACTTCATGTTGTGCAAGAAACCACAGCCAGAGAAAGTGGGAGAACATGGAAATTCGCCACCGGAGCCAAGTATCCCCCGCAAAGGCACAGGAAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA 420 49.52 MLLYKQKKNQNVKGNRLLISVNVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPILGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKGTGSWKSWINKSLNMKIYSH 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5493357 5495137 - Carg26340-RA Car15g00904 162741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00904 139 MobiDBLite consensus disorder prediction 98 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00904 - - - csv:101204652 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00904 Car-Chr15:5493357 Car20g00491 Car-Chr20:2731850 9.42E-09 dispersed
Car01g00342 Car-Chr1:1969455 Car15g00904 Car-Chr15:5493357 1.11E-34 transposed
Car15g00904 Car-Chr15:5493357 Car04g02065 Car-Chr4:16817815 1.01E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00976 . . . . . . . . Cmo15g00998 . . . Car15g00904 Cpe13g00365 . . . . . . . . . . . . . . . . . Chy09g00847 Cme09g01380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000783 5 3 3 7 4 3 3 3 3 1 3 3 3 2 3 4 3 3 4 3 3 3 2 1 2 3 3 4 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00904 Car_Chr15 FPKM 28.346479 30.83889 21.396301 23.641376 14.128779 13.496573 14.02059 16.019485 14.340204 15.460973