Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00909 ATGGCCGCCAACAAATTTGCCACCATCTTGCACCGAAACTCCAACAAGTTCACCCTTATTTTAGTCTACGCTCTTCTCGAATGGGTTCTCATCTTTCTTCTTCTTCTTCAAGCCCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCCTGTTTGTGGTGTTCCAGAGTGGACCATGTGTTCGAGCCTGGGAGAAAGCATTCTTACAGAGATCTTCTTTGTGAAGCTCATTCCATGGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGGAAACTCACTGAGTTTCGAGATTTGTGCGAGGATTGCTCGTCTTCTTCTAAGTCCGACGAGTTCTATCAGATTCCTAAGAGCTTTCCCTTTTTTGGTGATGAGAAGGAGGGTTTGAAGAGCTGTTCTTGCTGTGGGGAGAGCTTGAAGAATCGTTTGTTTTCTCCTTGTATTTTGATTAAGCCCAATTGGGGGGATTTGGATTATGCCCAGAAGGGGGATTTTATTTCTGAGGCGGAAATTGATGTTCAATCGGAAGATGTCATCGGAGACAGGGAAATCTCCAAGGTTTCCGGCGAGGAAGAGGCTGAGAAGAACTCCACTTGCTCTGTTTGTGGCTTTGGCTGTAAAGATTCAGCGGTTCATGAGGATGACGATAGAGCTGAAGATCTGAGCTCTTGTAATCAGAAACCAGTTCAAGTTGGTTGTGAGAAAGAGGATGAATTGGCTGAGATTTCTCCAAATCATCTTGAGTTCTACATTGACCGGGGCGACGATCGGCGGCTGATTCCAGTTGATTTGATCAACTTTTCGGCCTCCGAGGATGACCACAACAACGACAGCGACAACGACAACGTCCTTAGCCAAGTGAAAGATGAGGAACAAGGACAAGAGGATTGTGGGAATGAAGATGTCGTTTTGGATTTTGTCTCCCACTTTGAGAATCAAGATTGGGATGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAGAGTAGCAGAAGCCCCTCTGGCTATGAAGATCCATCAATGAGAGTAGAAAAAGAAGAACAAGCTGAGGCTTCCATTGATGCTCATAAAGAAGGCCTTGAAGAATTGGCAGTGGCAACAAGAGAGCCAGACTCAGATCTTCATCAAGATTTACACATGTGGAATGATGAACTTGAGGTAGAGATTTCGATCGGGACGAATATTCCCGATCGTCCCGATCACGAACCCATCGGCGACATTCAAACTCAAACCGACCTTCCTCCACATTCTGATGCACAAGAAGATGCTTCCCCAAGTTCATCATTGGAATTTGACACTATGCAAGATTCTAACAAAGCTCGGAAATCTGAGGAAGTCGAGGAAGTCGAGGAAGTCGAGGAAGCCGAGGAAGCCGAGGAAGCTAACGAAGAGGTAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCAACCGTTGGACGATCACAAACCGTCGAGTTCTGAGCTCAATGAGAATGAAGAAGAAGATAAAGTTCCTGATACACCCACTTCAATGGATAGTTTCCATCAGCTACACAAGAAGCTGCTATTACTCGACAGAAAGGAATCTGGAACGGAAGAGTCGTTGGATGGAAGCATCATAAGCGAGACTGAAAGCGGGGATGGAGTATTGACGATCGAGAAGTTGAAGTCGGCGTTGAGAACGGAAAGAAAGGCATTGAATGCGTTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCCATAGCAGCCAACCAGACAATGGCAATGATCAATAGGCTTCAAGAGGAGAAAGCAAGCATGCAAATGGAAGCTTTGCAGTACCAAAGAATGATGGAGGAGCAATCCGAGTATGACCAGGAAGCTTTACAGCTTTTGAACGAGCTCGTCGTAAAGAGGGAAAAGGAAAAGCAAGAACTCGAGAAAGAACTCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCTAAAGAGAAAATAGCATTGTTAAGGAACAGAAAAGAAGGTAGCTTCCAAAGTAGACATTCTTCGGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCAATCGATTTGAACACCGAAGCAAAGAAAGACGAAGATTTATGTTCTAACCAAGAAACGGAGAATCAAAACACCCCGGCTGAGGCAGTCCTTTATTTGGACGAAACCATGGCTAATTTCGAGGAAGAAAGGCTGTCCATTCTTGAGGAGCTGAAGATGTTGGAAGAGAAGCTCTTCACTTTAAGTGATGAAGAACAACAATTAGAAGACGTTGTACATTATTGTGAACAGAATGGTAATGGCTACCACAAGAACTCGGATTATGCCACTGAAACAAATGGATTCGAAAACGGTCACCATTTGAACGGAAAACATTATCCCGAGAGAAGAGCGATGAGCACGAAAGCCAAACGACTTCTTCCCCTTTTCAACGATGCAGTCGATGCTGATATTGAAGACGTAACAAACAGAGAAGAACAAACTTTCGACTCCATTTCTGTCAACAAATTCGATACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTCGATCACGTGTACGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAGCATTGCATTGGCTCCCTAAAAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAGATCTTACAGCATCTCCGCGATCTAAGGAGCGTCGATCTCCATTTGAAGAACATGGGAGACAGTGTCCTAGCATGA 2736 44.63 MAANKFATILHRNSNKFTLILVYALLEWVLIFLLLLQALFSYLIVKFAEWFGLKRPCLWCSRVDHVFEPGRKHSYRDLLCEAHSMEISNLGYCSNHRKLTEFRDLCEDCSSSSKSDEFYQIPKSFPFFGDEKEGLKSCSCCGESLKNRLFSPCILIKPNWGDLDYAQKGDFISEAEIDVQSEDVIGDREISKVSGEEEAEKNSTCSVCGFGCKDSAVHEDDDRAEDLSSCNQKPVQVGCEKEDELAEISPNHLEFYIDRGDDRRLIPVDLINFSASEDDHNNDSDNDNVLSQVKDEEQGQEDCGNEDVVLDFVSHFENQDWDVAEVEAMDVEESSRSPSGYEDPSMRVEKEEQAEASIDAHKEGLEELAVATREPDSDLHQDLHMWNDELEVEISIGTNIPDRPDHEPIGDIQTQTDLPPHSDAQEDASPSSSLEFDTMQDSNKARKSEEVEEVEEVEEAEEAEEANEEVEFKILSVETSSQPLDDHKPSSSELNENEEEDKVPDTPTSMDSFHQLHKKLLLLDRKESGTEESLDGSIISETESGDGVLTIEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKELEVYRKKLQDYEAKEKIALLRNRKEGSFQSRHSSVSCSNADDSDGLSIDLNTEAKKDEDLCSNQETENQNTPAEAVLYLDETMANFEEERLSILEELKMLEEKLFTLSDEEQQLEDVVHYCEQNGNGYHKNSDYATETNGFENGHHLNGKHYPERRAMSTKAKRLLPLFNDAVDADIEDVTNREEQTFDSISVNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLKKGDKGIELLQEILQHLRDLRSVDLHLKNMGDSVLA 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5551900 5554823 + Carg26335-RA Car15g00909 162746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00909 911 Coils Coil 551 578 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 415 439 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 489 507 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 395 510 - -
Car15g00909 911 Pfam Zein-binding 553 643 IPR007656 -
Car15g00909 911 Coils Coil 583 656 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 474 488 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 343 357 - -
Car15g00909 911 Coils Coil 444 473 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 452 468 - -
Car15g00909 911 Coils Coil 725 759 - -
Car15g00909 911 MobiDBLite consensus disorder prediction 328 357 - -
Car15g00909 911 Coils Coil 844 864 - -
Car15g00909 911 ProSiteProfiles GTD-binding domain profile. 549 647 IPR007656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00909 - - - cmos:111444983 1671.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00909 Car-Chr15:5551900 Car18g00130 Car-Chr18:704699 2.85E-22 dispersed
Car16g00249 Car-Chr16:1575346 Car15g00909 Car-Chr15:5551900 1.56E-14 dispersed
Car15g00909 Car-Chr15:5551900 Car04g02061 Car-Chr4:16758831 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00909 Car_Chr15 FPKM 23.290644 25.938356 16.879915 19.509237 14.629759 11.693656 13.399946 23.985495 24.343594 24.900692