Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00917 ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCACCAAGTTTCTAAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCCCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGACAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGGAAGTCGTTGAAAGATTGA 405 48.89 MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6009018 6011339 + Carg23722-RA Car15g00917 162754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00917 134 Pfam Dynein light chain type 1 36 121 IPR001372 GO:0007017|GO:0030286
Car15g00917 134 PANTHER DYNEIN LIGHT CHAIN 1 127 - -
Car15g00917 134 SMART Dynein_light_2 31 121 IPR001372 GO:0007017|GO:0030286
Car15g00917 134 PANTHER DYNEIN LIGHT CHAIN 1 127 IPR001372 GO:0007017|GO:0030286
Car15g00917 134 SUPERFAMILY DLC 29 121 IPR037177 GO:0007017|GO:0030286
Car15g00917 134 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 24 122 IPR037177 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00917 K10418 DYNLL; dynein light chain LC8-type - csv:101219841 257.299
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g00094 Car15g00917 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00757 Car-Chr13:8555635 Car15g00917 Car-Chr15:6009018 7.91E-35 dispersed
Car15g00917 Car-Chr15:6009018 Car18g00129 Car-Chr18:701935 1.47E-32 dispersed
Car15g00917 Car-Chr15:6009018 Car04g02056 Car-Chr4:16707102 2.02E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g476 Blo01g00767 Blo16g00740 Bda01g01803 Bda11g00179 Bpe13g01017 . . . . . . . . Car04g00094 . . Cpe01g01836 . . . . . . . . . . . . . . . . Cone6ag0379 Cone9ag0408 . Csa05g02007 . . . . . Bda11g00179 . Bpe02g01979 Bma01g00479 Bma06g01124 . . Cmo15g01017 . . . Car15g00917 Cpe13g00356 . Bhi12g00928 . . . . . . Cla01g00625 Cam01g0654 Cec01g0646 Cco01g0671 Clacu01g0642 Cmu01g0617 Cre09g1887 Lsi09g00676 . Chy09g00834 Cme09g01366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007497 2 1 2 2 2 1 2 0 0 1 0 1 1 1 1 1 1 2 2 0 1 1 1 1 1 1 1 1 1 3 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00917 Car_Chr15 FPKM 2.285495 3.218131 1.868276 2.353291 4.28857 4.319811 4.797499 0.508581 0.527309 0.619403