Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00920 ATGGGGGACGTGAAGGACAAGTTCAAGGGTTTCATGAAAAGGTTCAATAATCCCTTGTCTTCTTCTTCCTCTGCTAGTTTCAAGGGCCAGGGAAGAGTTTTAGGGTCGTCTTCTTCGGGGTCAACTACTTCCTTGCCTACCCGCCCATCGCAAAATCCCATTTCAAAGCCGAAGCCGGTTAATCCATCTTCGGATTCCCCGCTAAATTCTAAGCCCCCGGTTGCAAATTCAATTGCCAGTGCCCAAAACAGGTCAGAGCAGTCGAATAAATCGAACCCAGATCGTAATCCGGCCGACGGATTTGATCCGTTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAATTACGGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCATCGACAGTGCATCCAAAGGACCAGCAGATCTGTCCACGAACGATGCAGAATCTCTGAGTGAACTCGAGTCTTGCGTTGGCACTTTCTTATCAGGGAATCCGTCACAAAGTTCATTGGATATCGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGACAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGAGGAGTGGACTTGTTGGAGTTTGTGGGTTTTAAATTGCGAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTCCAACAGCGGAAGAAATTAACATATTAGGTAAGGTAGTGGATTCAATTGACCGCCCAAAGCTTGATGAACAACAGCAGAAACCCAGCACTGCTACTATGGCTACAACTCAGGCTGATGAACTGGTCGAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAATATTGCAGCCAACATCGAGCTACCGGACTCGTTTTACAACCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCTAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTATACAAGAACAGTTATCAGAATTCAATTTCCGGATGGCGTGGTACTTCAAGGTGTTTTTTCTCCTCGGGAGCCAACAAGTGCTCTATATGAGTTTGTGAGCACAGCCCTGAAGGAACCCAGTTTGGAATTTGAGTTGATACATCCTGTCGGTGTTAAACGGCGTACGATCGCTCATTTTCCCACGGGAGAGAGAGGTAAAACGCTAGATGATGAGGAGTTAGTCCCTTCAGCTTTGGTCAAGTTTAGACCAATGGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTAAGCGGCTCAGCTGTGGCTCCTCCTCCACAACTTTAA 1437 45.16 MGDVKDKFKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPTRPSQNPISKPKPVNPSSDSPLNSKPPVANSIASAQNRSEQSNKSNPDRNPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQNYGSEEEVSVHVDSCVIDSASKGPADLSTNDAESLSELESCVGTFLSGNPSQSSLDIVLKLLRNIVREPDNSKFRKIRLSNPKIKEAIGEAVGGVDLLEFVGFKLREEDGEMWATMEVPTAEEINILGKVVDSIDRPKLDEQQQKPSTATMATTQADELVEPKKVDRQIRVFFAVPENIAANIELPDSFYNLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPREPTSALYEFVSTALKEPSLEFELIHPVGVKRRTIAHFPTGERGKTLDDEELVPSALVKFRPMETDSVVFTGLRNELLEIIEPLVSGSAVAPPPQL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6041441 6044549 - Carg23725-RA Car15g00920 162757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00920 478 SUPERFAMILY PUG domain-like 180 244 IPR036339 -
Car15g00920 478 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Car15g00920 478 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Car15g00920 478 Pfam UBX domain 360 438 IPR001012 GO:0005515
Car15g00920 478 Gene3D - 353 444 - -
Car15g00920 478 MobiDBLite consensus disorder prediction 1 107 - -
Car15g00920 478 SMART ubx_3 356 444 IPR001012 GO:0005515
Car15g00920 478 CDD UBX_UBXN6 364 443 - -
Car15g00920 478 Gene3D - 177 266 - -
Car15g00920 478 ProSiteProfiles UBX domain profile. 359 442 IPR001012 GO:0005515
Car15g00920 478 MobiDBLite consensus disorder prediction 15 51 - -
Car15g00920 478 CDD PUB 181 266 - -
Car15g00920 478 SMART PGNneu 183 250 - -
Car15g00920 478 Pfam PUB domain 182 247 IPR018997 -
Car15g00920 478 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Car15g00920 478 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00614 Car-Chr5:3646567 Car15g00920 Car-Chr15:6041441 3.51E-08 dispersed
Car08g00844 Car-Chr8:5648476 Car15g00920 Car-Chr15:6041441 5.89E-07 dispersed
Car04g02840 Car-Chr4:21576254 Car15g00920 Car-Chr15:6041441 1.16E-07 transposed
Car15g00920 Car-Chr15:6041441 Car04g02055 Car-Chr4:16702729 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00920 K14011 - csv:101209321 778.089