Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00923 ATGGATAAAATCTTCCGGATAATGAATATCAATAGTTCAACACATGAATTACTCAATTCCACGCTGAGAAGTCCTAAATATCTCACTCCGCTTCTGCTGTTTCATGGTTCCAACAAAAGTCTGGCCTCAGATTCGGAGCTGGAACTCGATTTTGACAAGCTCGAACATGGATCTTCAATACCCAGGTCTCCAAGAAGCTGGATTTCTGAAAAACAGGTTGATCTCAGAGAGATTTCAAAAGCAAGGGAGTTGAATGTTCAGATAGACCCATGGCCGGAGTGGGTGAACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTCGAAGGAGGCGGAGTACCATTTCTGAATGCTGAACTGGGTGCAAAAGATTTCAATCATATTCGGACTGCCTGTCTTGATTTTGCAAGGGATCGGTCTAACCTTATACGGTGCTTGTCCAGGAAAGAGTTACAGGTGATTGCAGGATGTGGATGCCCAAGCATAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATGTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGCAACCTGCGGGGAGAATGTGAGAGGGCATATGCAAAGGCATGCGGAGACGGAGGAGGTCGGACCGTGGATGTCATGCGCGTTTTGTTATTTTACGGGCTTGATCACATCTCTGCTATGGTGGAGAACAGACCTTGTGTGGACAAGAAGGCTAATGACTCTGTTAGAAAGCTATTGAAAGAAATTGTTGATTACAGTGCAGGAGAACGTGAATCTGATGTTCTAAAGTCTAATGAGGGGTTTTCAACAGAAAATCATGAGACAAATGCTTCAGCAACACAAGGCGACTGGCATTGTCCAAAATGCAACTTCTTCAACTTTTCTAGAAATGTCAAGTGCTTGCGTTGTGGTAGTATAGCTCTTGAGAGGCTTCGGAAACGAAACGAGGATCAAGGCAATCTTCCATTGAAGAAGGGCGACTGGATTTGCGACAAATGTAACTTCTTGAACTTTGCTAAGAATTCAACATGTTTGCAATGCAAAGAGAAGCCATTGAATCGACAGCTGAATCCAGGGGAGTGGGAATGCGAATCGTGCAACTATATTAATTTTAGGAAGAACACGCTATGCTTGAGGTGTGATCACCGACGGCCCAAAGCACTAAACACTAGAAACGTTTCTGGTGGACCTAAATTGTGTTCTGGTAAAGTTGGAACCAATGCAAGTAGGAGGAAGAACGATGATGGTTGGATGTGGAGATTTGGTGGAAGTGAGGGTGAAGAACACTGCAGATTTCCGGATTTTCCAAGTGCAGAAAGTGGAGAGAGAAGGAAAGTGGAGATGTTAGAGAGGAGAAGAAGCTTGGAAAATGCAATGGAGAAAGAAGAAGATCTGATCTTGAGATGTGACAATATGGAAAGAAGAATTGAGTTTGTTGAATGTAGTGATGATGAAGATATGATGGAATGGTTTGAACACAAGCCAGAACAACAACGATGA 1497 43.49 MDKIFRIMNINSSTHELLNSTLRSPKYLTPLLLFHGSNKSLASDSELELDFDKLEHGSSIPRSPRSWISEKQVDLREISKARELNVQIDPWPEWVNFMECLSKKGYFEGGGVPFLNAELGAKDFNHIRTACLDFARDRSNLIRCLSRKELQVIAGCGCPSIDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGECERAYAKACGDGGGRTVDVMRVLLFYGLDHISAMVENRPCVDKKANDSVRKLLKEIVDYSAGERESDVLKSNEGFSTENHETNASATQGDWHCPKCNFFNFSRNVKCLRCGSIALERLRKRNEDQGNLPLKKGDWICDKCNFLNFAKNSTCLQCKEKPLNRQLNPGEWECESCNYINFRKNTLCLRCDHRRPKALNTRNVSGGPKLCSGKVGTNASRRKNDDGWMWRFGGSEGEEHCRFPDFPSAESGERRKVEMLERRRSLENAMEKEEDLILRCDNMERRIEFVECSDDEDMMEWFEHKPEQQR 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6088667 6091430 - Carg23728-RA Car15g00923 162760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00923 498 ProSiteProfiles Zinc finger RanBP2 type profile. 356 385 IPR001876 -
Car15g00923 498 ProSitePatterns Zinc finger RanBP2-type signature. 360 379 IPR001876 -
Car15g00923 498 ProSiteProfiles Zinc finger RanBP2 type profile. 279 308 IPR001876 -
Car15g00923 498 Pfam Zn-finger in Ran binding protein and others 358 380 IPR001876 -
Car15g00923 498 Pfam Zn-finger in Ran binding protein and others 323 347 IPR001876 -
Car15g00923 498 Pfam Zn-finger in Ran binding protein and others 281 304 IPR001876 -
Car15g00923 498 Coils Coil 437 474 - -
Car15g00923 498 ProSitePatterns Zinc finger RanBP2-type signature. 283 302 IPR001876 -
Car15g00923 498 ProSiteProfiles Zinc finger RanBP2 type profile. 323 346 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00923 - - - cpep:111786324 997.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00594 Car-Chr9:3356329 Car15g00923 Car-Chr15:6088667 3.09E-12 dispersed
Car10g00314 Car-Chr10:1540470 Car15g00923 Car-Chr15:6088667 3.54E-68 dispersed
Car15g00923 Car-Chr15:6088667 Car11g00292 Car-Chr11:1599684 2.23E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00923 Car_Chr15 FPKM 0.0 0.0 0.507329 0.747637 0.427859 0.444345 0.544063 6.434062 5.15681 5.299431