Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00959 ATGGGCGCAGAGAAAGAGGCAGAATCAAGCGTTGACGAGGACAGTAAGCAACAGAGTTTGAAGCGTTCAAGGCCTCTTTCGTACAACATGACCGTCACGAACTCGAGTGTTGCTCAGAGTTTGGATGATTCTTTCCTTTTCCCAGTTGAAGAGATTGTACAATATCCATTGCCGGGATATGTTGCGCCCACTTCAATAACGTTCAGTCCAGACGATAGTTTCGTTACTTACTTGTTTAGTCCTGATTGTACCTTAAATAAGAAGGTTTTTGCTTTCGATATCACAACTGGCAAACAGGAGTTGATTTTCAGTCCTCCTGATGGTGGGCTGGACGAGTGTAATATTTCACCGGAAGAGAAACTGAGGAGAGAAAGATTAAGGGAACGCGGTTTGGGAGTGACTCGGTATGAATGGGTGAAATCAAGCACCAAAAGGAAAGCGATTATGGTGCCTCTGCCTGCTGGGATTTATATCCAGGACTTTCTTGGCTCAACGCCCGAGCTTAAGCTTTCCAGTAAACCCTCTTCGCCGATCATGGATCCACATCTCTCACCAGACGGGACCATGCTTGCGTTTGTTAACGATGGGGATCTTCATGTCATGAATCTATCATACAACGAAATGAGACAGTTGACTGTTGGTGCTAACCGAAACATTTTGCATGGAATTGCGGAGTATATAGCTGAGGAGGAAATGGATCGAAAAAACGGGTACTGGTGGTCACCAGACGGCAAATATATTGCATTTACACAAGTTGATACTTCAAAGATCCCTGCATTTAGAATCATGCATCAAGGTAAGAGTTCGGTTGGTTCGGATGCACAAGAAGACCATGCTTATTCATTCGCTGGAACTTCCAATGCCATTGTTCGTCTCGGTGTCGTCTCTGTTGCTGGAGGCTCAATTACTTGGATGGATCTTCTTTGTGGAGAAACAGCTGAAGAGGAATATCTGGCTCGAGTCTGTTGGATGCACGAGAATATTCTCATCGCTCAGGTTCTGAATAGGTTACATACGAAGCTGAAAATTCTCAGGTTCGATATCAAGACGGGAGAGAGAAAAGTTTTGCTTGTAGAAGAACAAGATTCATGGGTTAACTTACATGATTGTTTCACCCCACTAGACAAAAGTATCAGCAAATATTCTGGGGGATTCATATGGGCAAGCGAAAAAACTGGATTTAGACATCTTTATCTACACGATGGCCATGGGACGTGCTTGGGACCGATCACTGAAGGTGACTGGATGGTCGAACAAATTGCCGGTGTAAACGAGGCAACCGGAATAGTTTATTTTACTGGAACTCTCGATGGTCCTCTCCAATCTCATCTGTACTGTACCAAACTAACTACTGCAGGGAATGCCCCCTTGGAGCCACCAATAAGACTGACTCATGGCAAGGGGAAACATGTCGTTGTACTCGATCATCGGATGAGAAGTTTTATCGACATTCACGATTCCCTCGATTCTCCCCCGAGGGTGTTGCTCTGT 1491 44.94 MGAEKEAESSVDEDSKQQSLKRSRPLSYNMTVTNSSVAQSLDDSFLFPVEEIVQYPLPGYVAPTSITFSPDDSFVTYLFSPDCTLNKKVFAFDITTGKQELIFSPPDGGLDECNISPEEKLRRERLRERGLGVTRYEWVKSSTKRKAIMVPLPAGIYIQDFLGSTPELKLSSKPSSPIMDPHLSPDGTMLAFVNDGDLHVMNLSYNEMRQLTVGANRNILHGIAEYIAEEEMDRKNGYWWSPDGKYIAFTQVDTSKIPAFRIMHQGKSSVGSDAQEDHAYSFAGTSNAIVRLGVVSVAGGSITWMDLLCGETAEEEYLARVCWMHENILIAQVLNRLHTKLKILRFDIKTGERKVLLVEEQDSWVNLHDCFTPLDKSISKYSGGFIWASEKTGFRHLYLHDGHGTCLGPITEGDWMVEQIAGVNEATGIVYFTGTLDGPLQSHLYCTKLTTAGNAPLEPPIRLTHGKGKHVVVLDHRMRSFIDIHDSLDSPPRVLLC 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7006775 7010113 + Carg26614-RA Car15g00959 162796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00959 497 MobiDBLite consensus disorder prediction 1 25 - -
Car15g00959 497 MobiDBLite consensus disorder prediction 1 20 - -
Car15g00959 497 Pfam Dipeptidyl peptidase IV (DPP IV) N-terminal region 150 492 IPR002469 GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00959 K01278 DPP4, CD26; dipeptidyl-peptidase 4 [EC:3.4.14.5] - csv:101223131 918.687
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car02g00927 Car15g00959 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00959 Car-Chr15:7006775 Car02g00927 Car-Chr2:6560459 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1044 Blo06g01060 . . . . . . . . . Cma02g01118 . Car02g00927 Car15g00959 . Cpe05g00600 . . . . . . . . Cla01g00044 Cam01g0041 Cec01g0040 Cco01g0042 Clacu01g0043 Cmu01g0041 Cre09g2466 . . Cone14ag0013 Cone15ag0015 . Csa05g00050 Chy09g01438 . . . . Bda15g00784 . Bpe12g00351 Bma08g00386 . . Cmo02g01146 Cmo15g01088 . . . . . Cpe13g00316 Bhi12g00638 . . . . . . . . . . . . . Lsi09g00022 . . Cme09g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002992 2 7 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 11 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00959 Car_Chr15 FPKM 27.889273 27.047276 27.412445 27.494644 53.510765 57.60281 49.184933 38.977287 36.751671 32.747219