Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00982 ATGGAACAGAAGCACATTTTTCTGTCTGCTTTGGGTGTTGGTGTTGGTGTTGGGGTGGGCCTTGGATTAAGCTCTGGACAAGCTGTTGGCAAATGGGTTGGAGTGAATGCCTCTTCTGAGGTGATTACAGGACAAAAGATTGAACAGGAACTCACCAGGCAGCTGCTTGATGGCAGAAACAGCAATGTCACCTGTGATGAGTTTCCTTATTATCTAAGCGAGAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGCGACATCTCGAGGCACACCAGAAACCTTTCACCAGCAAGTCGAGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCTCTCGCGCATCACTTCGAGTCAAAGTTGCTGTTGTTAGACGTTTCCGACTTTTCCCTAAAGATGCAGAGCAAATATGGCTGTCCCAAGAAAGAATCTTCATTTAAGAGGTCCATTTCCGAGGTGACATTGGAGCGAATGTCGAGCATTTGGGATTCCTTCTCGATTCTTCCGACAAGTGGGAATACCTGTGATATACCGAGGGCTCGTCCAATCCTCCAAAACTTCGGAGAAACGCTTCTGCTGCGTCGGATATTAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCGCACGAATGGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCTTGATGTCGGTATCAGAAACGAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACCAAGGATGTACAATCTGTTCCATAAATTTCTGAACAAGCTCTCGGGATCTATTTTAGTACTCGGTTCCCGATTAGTCGATGTCGAAAATGATTGCGGAGATGTTGACAACAGATTGACGAGTTTATTCCGATATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGCAGAAGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATTGCTGAAGTACTTGCTGCAAATGATCTTGAATGTGACGATCTTGGTTCAATCTGCCATGCAGACACCATGGTTCTGAGTAATTATATTGAAGAGATCGTCGTGTCGGCGATATCCTATCATTTGATGAACAACCGGGATCCGGAATACCGAAACGGAAAACTTTTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTAGAGACGAATGAAGAATCATCTAAGGTAGCCCAAAGGGACGAGGCGATTGGGGCAAAGACGGAATCGAAATCTGAGAACCCAGCTGCAGAAAACAGAAATGAGGCAGAGAAATCTGAAATTCCTCCCGACAACGAATTTGAAAAGCGTATAAGACCCGAGGTTATCCCTGCAAATGAAATTGGGGTGACATTTGAAGACATTGGTTCTATGAATGAAATCAAAGAGTCCTTACAGGAACTAGTTATGCTTCCTCTTCGTCGACCAGACCTCTTTAAAGGAGGGCTTCTTAAACCGTGTCGGGGCATTCTACTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAACGAAGCTGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAACGTCCGAGCATTGTTCACGCTCGCAGCAAAAGTCTCACCCACGATTATTTTTGTCGATGAAGTTGATAGCATGCTCGGCCAACGGACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAGAATGAATTCATGTCACACTGGGATGGACTCCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCAATCATTAGGCGATTCGAGCGCAGAATTATGGTTGGTCTTCCGTCCGTGGAGAGCAGGGAAATGATCATGAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACCGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGAGAGATGAAGGAGAAGGAGGAGAAGGAGACGAAAAATGAGATCGAGATCGAGAAGGAGAAGGAGAAGGAGACGGAAAATGAGATCGAGATCGAGAAAGAGAAAGAGAAGGAGAAGGAGGAGACAAAAGATGAGATCGAGATCGAGAAGGAGACCAAAAATGATTTGGAAAACACTACAGTTACGAAAGAGGCAGGAAAAGAGGAACAACGATCGTTCTTCAATTCGTTGCTCTGCGCTTCATCTTCATTTTCCCATTTCCAATACCATTGTTTCTGCTGCGCATTTCGTTTCCGGATGACAGATCCATTGGAGAGATACCAAAATCTTGCCCTAACGGACTCTCTGGCGAAGAGTTACAGCTACCCATTAGCTTGTAAGGAGCTAAGCTTCATTACCAGAGGCGCTTTCAATAAACTTCCCAAGAATCTCCAATCCCTCATCTTCCAACATATTATCACCGCCTTTCATCTTCTTCCGGAAATGCAGACGAGCTCTGCTGTTTCGGCTGCGCATCTTCTTGCTCAGGGTGTTGAAGCTTCTTTGCCTAAGCAAAAGAGAAATTCAGCAATTGTAGAATTTAAGAAAGCAATGGTTGCTCATAAGAGGCGTAGTAAAGCACGTCAGGAAGTAAAAGGTTCGTCTCAACTCCCTCAAGACGTTCTCCTCCACATCTTCCGCTTTCTAGATATTGAATCTTTAGTTTCAGCTGGGCTAGTCTGTCGGTCATGGAATGCAGCAGCAGATGATGAATATCTGTGGCAGTTTCAGTATACAACATTTTTTGGTTGCTCTGATGAACCCATTAATGATAAAGACAGTGTGGATGGCTTAGCTAGCACACCTCACGTTGATTGGAAAGAGGCGTTCAAGGGAGCATATGTAGGTAATTCTCTGTGGAGAAACAGATCTGGAAGGGGATACTGCAAACACTGTGACACAATAGTTTCCTTTAGTACCTTGAGATGTCCCAATGATCATGGTAGAAATAAAAACAAACAAATCAAGCCTCTGTCAATCAACCAGGTTGTTGAATATGTGTTAACTGGAACTTCAGAATTGATTTATTCTTCGGATAGCGACACTGATTCAGATGAAGTTGTGATTTCTGAGTTTTGGGCTCTTCCAAAGTATTTGGGCAGAAGACGCCCCAACTGA 3333 43.86 MEQKHIFLSALGVGVGVGVGLGLSSGQAVGKWVGVNASSEVITGQKIEQELTRQLLDGRNSNVTCDEFPYYLSERTRVLLMSAAYVHLKHCDISRHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFKRSISEVTLERMSSIWDSFSILPTSGNTCDIPRARPILQNFGETLLLRRILVVSHQTMLQQTQRTNGWCFDEKLFLQSLYKVLMSVSETSSIILYLRDVERLLLQSPRMYNLFHKFLNKLSGSILVLGSRLVDVENDCGDVDNRLTSLFRYSVEIRPPEDENHLVSWKAQLAEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNEESSKVAQRDEAIGAKTESKSENPAAENRNEAEKSEIPPDNEFEKRIRPEVIPANEIGVTFEDIGSMNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMIMRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQREMKEKEEKETKNEIEIEKEKEKETENEIEIEKEKEKEKEETKDEIEIEKETKNDLENTTVTKEAGKEEQRSFFNSLLCASSSFSHFQYHCFCCAFRFRMTDPLERYQNLALTDSLAKSYSYPLACKELSFITRGAFNKLPKNLQSLIFQHIITAFHLLPEMQTSSAVSAAHLLAQGVEASLPKQKRNSAIVEFKKAMVAHKRRSKARQEVKGSSQLPQDVLLHIFRFLDIESLVSAGLVCRSWNAAADDEYLWQFQYTTFFGCSDEPINDKDSVDGLASTPHVDWKEAFKGAYVGNSLWRNRSGRGYCKHCDTIVSFSTLRCPNDHGRNKNKQIKPLSINQVVEYVLTGTSELIYSSDSDTDSDEVVISEFWALPKYLGRRRPN 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7544917 7556746 + Carg27015-RA Car15g00982 162819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00982 1110 CDD AAA 525 658 - -
Car15g00982 1110 Coils Coil 711 784 - -
Car15g00982 1110 Pfam AAA+ lid domain 679 722 IPR041569 -
Car15g00982 1110 SMART AAA_5 523 660 IPR003593 -
Car15g00982 1110 MobiDBLite consensus disorder prediction 724 789 - -
Car15g00982 1110 ProSitePatterns AAA-protein family signature. 630 649 IPR003960 GO:0005524|GO:0016887
Car15g00982 1110 ProSiteProfiles F-box domain profile. 936 982 IPR001810 GO:0005515
Car15g00982 1110 Pfam F-box-like 940 983 IPR001810 GO:0005515
Car15g00982 1110 MobiDBLite consensus disorder prediction 420 477 - -
Car15g00982 1110 Pfam ATPase family associated with various cellular activities (AAA) 527 657 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00982 - - - csv:101216426 1229.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00661 Car-Chr4:3833608 Car15g00982 Car-Chr15:7544917 0 dispersed
Car04g01131 Car-Chr4:6529324 Car15g00982 Car-Chr15:7544917 2.30E-07 dispersed
Car09g00673 Car-Chr9:3963355 Car15g00982 Car-Chr15:7544917 6.22E-06 dispersed
Car15g00982 Car-Chr15:7544917 Car18g00225 Car-Chr18:1278709 2.20E-19 dispersed
Car02g00831 Car-Chr2:5984267 Car15g00982 Car-Chr15:7544917 0 transposed
Car15g00982 Car-Chr15:7544917 Car16g00512 Car-Chr16:3275096 0 wgd
Car15g00982 Car-Chr15:7544917 Car02g00830 Car-Chr2:5982744 6.59E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004262 1 2 1 1 1 1 1 1 1 1 3 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 2 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00982 Car_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0