Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00988 ATGGCGGCCGGAAACAATGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTACAGGACAACCCCAACTGCCACCGCTGCCACAGAAACCGACTTGTCGTGTCTCGCTTCTTTAACATTCGACGACGATCCAAACGACGTCGCATTCTCCTTTCCCGACATACTTCAACCCCAACAACAACAACAACAACAACACGACGGCTTCGATGAATTACACCAAGCTATCTGTTTCCTTCCCAACTCCCTCACCGCCGCCGTCACCATCGCGCCGGAATTTCCCACCGCCACCACAAACCGTTACTTTCAAGAGGAAATTACACCCATTCTGCCGCAGCCGGATCCTGTGGAGGCGGCAGAGACGGCGGCGGCGCTGCAGAATCAACACCACCACCAAATCCAGCCTTCGTTCCCGCCGGAATTCCCAAATTCGCCAATGGTGCAACCTAACATACCCAAATCGAGAAAAAGAAAAAATCAACAGAAGAGAACTGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTGCCTCGCCGGAAGTTCTCGGAACAGGCCACTCTCCTCCATCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGATCACCACTGCTCTGGTGGGGTCTGGTTCTTCACCGGCTGATTCTCCGATGACGCCGTTCAACGATGACTATGGTGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGACGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGGTTTGATGAGATTCGGAGGCGGCGACCACCATAA 1029 51.51 MAAGNNDWDLSAVVRSCNSAAYRTTPTATAATETDLSCLASLTFDDDPNDVAFSFPDILQPQQQQQQQHDGFDELHQAICFLPNSLTAAVTIAPEFPTATTNRYFQEEITPILPQPDPVEAAETAAALQNQHHHQIQPSFPPEFPNSPMVQPNIPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPDSFIITYTGEHIHPRPTHRNCLAGSSRNRPLSSITNKNPTGDPNPSLITTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGFDEIRRRRPP 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7577166 7578428 - Carg27021-RA Car15g00988 162825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00988 342 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car15g00988 342 Pfam WRKY DNA -binding domain 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g00825 Car15g00988 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00668 Car-Chr4:3888278 Car15g00988 Car-Chr15:7577166 2.48E-40 dispersed
Car06g00922 Car-Chr6:7155072 Car15g00988 Car-Chr15:7577166 5.34E-49 dispersed
Car15g00988 Car-Chr15:7577166 Car18g00494 Car-Chr18:3548231 4.60E-38 dispersed
Car14g01866 Car-Chr14:14469529 Car15g00988 Car-Chr15:7577166 2.02E-42 wgd
Car15g00988 Car-Chr15:7577166 Car16g00519 Car-Chr16:3310847 2.16E-40 wgd
Car15g00988 Car-Chr15:7577166 Car02g00825 Car-Chr2:5964206 8.50E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4857 PF03106 WRKY 5.30E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00988 K13425 - cmo:103482922 413.69