Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00995 ATGGAAGCGCCTTTGCTACATGGTCTCGCCGCGGCCGACTATGAGCCACTCAAGAGTTTCGGCGACGCCAATCGTGTGTTCTTCGCTGAGACGAAGAAGCTCTGGAAGATTGCGGCGCCTATTGTGTTTGGTATACTTTGCCAGTATGGAATCAACTCAGTCACTAGCATTTTCGTTGGACATATCGGCGACGTTGAGCTTTCCGCCGTTTCTATCTCTGTTTCCGTTATAGGAACCTTCGCCTTTGGCTTCATGCTTGGTATGGGAAGTGCACTGGAGACGCTGTGTGGTCAAGCTTATGGCGCTGGACAAGTTTACTTACTTGGTGTTTATATGCAACGTTCATGGATTATTCTCACGGTTTCTAGCTTCTTTATTCTACCAATTTACTGGTTTGCTGAACCAATCCTAAAGGTTCTGGGACAAACAGATGAAATATCTGAAGTTGCAGGATGGTTCACAAGGTTGCTTATTCCCGAACTCTTTTCACTGGCGATCGTTTTTCCCACCCAAAAGTTCCTTCAAGCCCAAAGCAAGGTCAATGTCCTTGCCTATATCGGGTTTGTCGCCTTATTATTACATGCTGCAATGCTCTGGCTCTTTATTTTCGTATTCAACTGGAACCTAACTGGTGCAGCTATTGCAAGCAATATTTCAAGTTGGGTTACTGCCATAGCACAAGTTATCTATGTTGTTGGTTGGTGTAAAGATGGATGGACTGGTTTGTCATGGTCGGCTTTCAATGATATATGGGCCTTTGTTGGCCTTTCCTTTTCATCCGCTGTAATGCTTTGCCTAGAACTCTGGTATATGATGAGTGTAATTATTCTTACTGGCCATCTCGATAACGCGGTATATGCCGTTGGTTCCCTTTCAATTTGCATGAATATCAACGGGCTCGAAGCAATGTTATTTATAGGTATAAATGCTGCCATCAGCGTGCGGGTTTCTAATGAGCTTGGACAAGGGCATCCAGTCGCGACCAAATATTCTGTCTATGTTACAGTGTTTCAGTCTCTTCTTCTCGGCTTACTATCCATGGTGGTTATCTTAATCACGAAGGATAGTTTTGCTGTCATTTACACCAGCAGCAAAGAAATGCAAGCTGCTGTCTCTAAACTAGCATACCTTCTTGGAATCACGATGGTTCTTAACAGTGTCCAGCCAGTAATTTCAGGTGTTGCTATTGGAGCTGGTTGGCAAACGTTGGTAGCATATATCAATCTTGGCTCTTATTATGCTTTTGGTCTTCCCCTTGGTTATCTTCTTGGTTATACAAAACATTTGGGAGTTCAGGTGAATCAGTCGATAGAACGGATGAAAAGATGGGGAGGACAAGAGGTCAAAATTGTCAATTCAGCTGATTACATATGA 1374 43.67 MEAPLLHGLAAADYEPLKSFGDANRVFFAETKKLWKIAAPIVFGILCQYGINSVTSIFVGHIGDVELSAVSISVSVIGTFAFGFMLGMGSALETLCGQAYGAGQVYLLGVYMQRSWIILTVSSFFILPIYWFAEPILKVLGQTDEISEVAGWFTRLLIPELFSLAIVFPTQKFLQAQSKVNVLAYIGFVALLLHAAMLWLFIFVFNWNLTGAAIASNISSWVTAIAQVIYVVGWCKDGWTGLSWSAFNDIWAFVGLSFSSAVMLCLELWYMMSVIILTGHLDNAVYAVGSLSICMNINGLEAMLFIGINAAISVRVSNELGQGHPVATKYSVYVTVFQSLLLGLLSMVVILITKDSFAVIYTSSKEMQAAVSKLAYLLGITMVLNSVQPVISGVAIGAGWQTLVAYINLGSYYAFGLPLGYLLGYTKHLGVQVNQSIERMKRWGGQEVKIVNSADYI 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7780382 7784332 + Carg23171-RA Car15g00995 162832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00995 457 Pfam MatE 260 422 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car15g00995 457 Pfam MatE 40 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00995 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101213682 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00995 Car-Chr15:7780382 Car17g00408 Car-Chr17:2721359 9.58E-170 dispersed
Car18g00106 Car-Chr18:572502 Car15g00995 Car-Chr15:7780382 1.87E-12 dispersed
Car15g00995 Car-Chr15:7780382 Car13g00778 Car-Chr13:8654218 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g741 . . . Bda07g01895 Bpe03g00147 . . . . . . . . Car15g00995 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01381 . . Blo09g00070 . . . . . . . . . . . . . . Cpe13g00267 Bhi12g00020 . . . . . Lcy12g0048 . . . . . . . Lsi09g00087 . . Cme09g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g00995 Car_Chr15 FPKM 15.183339 16.380739 23.945225 25.685266 35.9739 37.256569 37.22855 20.565207 19.966776 21.175205