Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01000 ATGGATTCGTCTGCGAAAGTCGAGTCGAAGCTCAGAAGAGTTCCCAAGGGTTTCAACGAGGCGCGGAAGGTGCGGGTGGTTGCAAGGATTAAAAGCTTTGCTGATCAGGTACTAGATGGAGGTTCTATGGCGTCGTGGATCTCTGTGAACAAGCCTGATGGAGATGCTTCTGACTCTGTAACCATCTCTTTCGGAGGTCAACCAGTGAGTCGTAAGGAGACTTATGAAGTAGATTATTGCTATGAGCAGAATGAAGACACTGAAAAAATATTTGCAAAAGAGGTGAAACCTCTGATTTCTGGAGTCTTTGATGGTCATCATGCAACCGTTATTGCATATGGTGCAAGAGGCACTGGAAAAACTTCTACGATTCAGGGTACTATTGATAAACCGGGTTTGGCATCATTATCCATGAATGAATTACTTTTAATGGCCAAAGAAAAAGGGAAGTCAATTTTCATATCGTACTATGAAGTTCATGTGGACCATGTTTATGATTTACTGGATCCGAAACGACCAACAGTTTTAGTATTGGATAACGGTCATGGCAAAATACAACTTAAGGGACTTTCGCAGATTCCAGTGAAATCCTTGTCAGACTTCTACGAACTATATTTGGGTTCTAGTTCACGTAAACAAGGGCAAAAGATTGCAAATGAATCCCCTCACAGAAGCCACCGGGGCTTGATAGTGCATATTTCATCTACTAATGAGGCTGCTTCGGATACTCGTTCTGTTGCCAAGATGAATTTTGTTGACATGGCTGGTTATGAAGATGCGAGAAGGAAAAGTATTGATGGCACTAGCCTCGTCGAAAATAGTAAAATTAACAAGTTCACATACGCCTTGCTAAATGTTGCTTCTGCGTTGAATTCTAATGATAACCATGTGCCATATCGAGAAAGTAAGCTTACACGCATTCTGCAAGAATCCATGGGTGGAACGCAAAGCAAAATTTTGATGATTTCTTGCTTGAATTCATCATTTTGCCAAGACTCCATCTACATGGCTAACTTGGCGGCTAGATCTTGTCAAGTAACCAAGCGGGTTGCTTCGGATACCATTAGGAAAATGAAGAGTTCTACAAATTCTGTGGTGCATTCATCGCTTAGAAACCAGATACCTAAAAGCGTTTCTGCAACTGTAAGAAAGCAGACCATCTCCCGATCTTATTTTTCTGAAAAGAAGGCAAGCGTTAGTACAGCCTCTTCCTATACAATAAAAGGAAGGAAGTTGTTTGAAGATGCAACAAGTCATTTGGGAAAACGGGACAAGGAAATGCAATTGCCAAGCGCATCTTCTGATTGTGTACCTCTGAAGTATGAAGAAGCTACTTCGGTTGTGGACCAGGCAAATCCATTGCCGTGTTCTCTAAAGCCTGAAGAAGAATGTACTTCTGCATTGGAAAAGGAATTCTCTGCCGCAGGAATTTCCAGTGCAGTAGAAACTACCATAGCGCCAAAGGATGTTTCGAATAGCAATCATGATCCTGGAAGAATCATTGATGGCATGAATGCATTATCTGCCACTGGAGATGGTCCAAACATGAATGACGGAAACAACTGTTCGATGATCAATATTGTTGATGAACTTCCTGTGGAAAGCACACCTGGCGTGACAAGTAGAACTAGTCTGTCTGTTGTTCAAAGTTCAGACTTGGACAAGGAAAACAATGGTTGTAGTACGATCAATGAAGATAAATCTCCTCCACTAAGTGCACAATTACAAGCATTATCCAACAATTGGAGATCAGTTTGTTCTTCCACACGGGCGTGCTTAAAGGTCTCTGATAATAATGCTCCCTATGGCCTAGTCTTTACTGATGTTACAGAACCACAAACTCCAACCATGGAACGGAGTTTGCGTGTCTACAATGAACAAGATGTTGTAAATCCATCCACTCCTTGGGAAACATTCAGCCAGCGCAGTACCGGTGTGAAGAAGTCACTTGTGGAAGATTATCTGAGGCTTCTAAACACAGCTAGCAAGGAAGAGCTGAAAAAATTGAAAGGAATTGGAGAGAAGAGAGCAACATCAATTATTGAATTTCGTGCAGAATCGCCTCAGCCTTTTAGAAGTCTCGATGATTTAATGGAGATCGGTTTATCAGCAAAGCAGATTAAGGAAATGATGAAAAAGGAAGTTGCTGGGCGATTATTCAACTAG 2166 41.69 MDSSAKVESKLRRVPKGFNEARKVRVVARIKSFADQVLDGGSMASWISVNKPDGDASDSVTISFGGQPVSRKETYEVDYCYEQNEDTEKIFAKEVKPLISGVFDGHHATVIAYGARGTGKTSTIQGTIDKPGLASLSMNELLLMAKEKGKSIFISYYEVHVDHVYDLLDPKRPTVLVLDNGHGKIQLKGLSQIPVKSLSDFYELYLGSSSRKQGQKIANESPHRSHRGLIVHISSTNEAASDTRSVAKMNFVDMAGYEDARRKSIDGTSLVENSKINKFTYALLNVASALNSNDNHVPYRESKLTRILQESMGGTQSKILMISCLNSSFCQDSIYMANLAARSCQVTKRVASDTIRKMKSSTNSVVHSSLRNQIPKSVSATVRKQTISRSYFSEKKASVSTASSYTIKGRKLFEDATSHLGKRDKEMQLPSASSDCVPLKYEEATSVVDQANPLPCSLKPEEECTSALEKEFSAAGISSAVETTIAPKDVSNSNHDPGRIIDGMNALSATGDGPNMNDGNNCSMINIVDELPVESTPGVTSRTSLSVVQSSDLDKENNGCSTINEDKSPPLSAQLQALSNNWRSVCSSTRACLKVSDNNAPYGLVFTDVTEPQTPTMERSLRVYNEQDVVNPSTPWETFSQRSTGVKKSLVEDYLRLLNTASKEELKKLKGIGEKRATSIIEFRAESPQPFRSLDDLMEIGLSAKQIKEMMKKEVAGRLFN 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7822358 7828951 + Carg23176-RA Car15g01000 162837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01000 721 Pfam Kinesin motor domain 68 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01000 721 ProSiteProfiles Kinesin motor domain profile. 23 346 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01000 721 Pfam Helix-hairpin-helix motif 658 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01000 K10403 KIF22; kinesin family member 22 - csv:101218738 980.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01000 Car-Chr15:7822358 Car05g01069 Car-Chr5:10315133 1.73E-31 dispersed
Car14g00121 Car-Chr14:599578 Car15g01000 Car-Chr15:7822358 2.26E-12 transposed
Car15g01000 Car-Chr15:7822358 Car02g01276 Car-Chr2:8550613 1.14E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01000 Car_Chr15 FPKM 41.330143 43.741142 29.012224 29.221565 39.265823 39.956306 43.232964 26.922812 24.96611 26.29011