Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01007 ATGCAAAATGCACCGCTTTTACTCCATTTCCCCATTTTGCCCTCCCCCTTCTCACTATCCTCTATTTCAGCTACTGCTTCTGCTTCTGCTCTTCCTTATTTCAGCTCATTAATCCGCAGCCGAGTTACCGCCCCAAACTCCAGGGTTTCTGTTCTTCCAAGAGGAGTTTGTCTTAGGGCAATGCCTTCTACTGGTGGTGGCGACGGCGACGTTAATGGTGGTGCTTTCTCTGGCTTCAGCCTCTCTGAATCCTCGTTCTTGGCCTCCTTAATGCCTAAGAAGGAAATTGCTGCTGATCGCTTCATCGAGGCTAATCCTGAGTTCGATGGCCGTGGTGTTTTGATTGCCATTTTTGATAGCGGTGTTGACCCTGCTGCTGCGGGATTGCAAGTGACATCAGATGGAAAGCCTAAAATATTGGATATTCTTGATTGTACGGGAAGCGGCGATGTTGATATCTCGAAGGTGGTGAAGGCCGATGCAGATGGTTGCATAATTGGAGCTTCAGGCGCTTCTTTGGTTGTCAATTCTTCGTGGAAGAACCCATCTGGTGAATGGCATGTGGGCTATAAATTCGTCTATGAGCTATTTACTGACACATTGATTTCTCGTTTGAAGCGAGAGAGAAAGAAGGAATGGGATGAAAAGAACCAGGAGGAGATTGCCAAGGCTGTTAAGGTTCTTGATGAATTTGATCAGAAACACACCAAGGTGGAGGACCCAAATCTGAAAAGGGTACGTGAGGACCTTCAATGCCGAGTTGATATTCTTAAAAAACAAGCTGAGTGCTATGATGACAAGGGGCCAATCATTGATGCTGTTGTTTGGCATGATGGAGAAGTATGGAGAGTTGCTCTTGATACACAAAGCCTTGAGGATGAACCTGACTCCGGGAAACTTGCCAACTTTGTACCACTAACAAATTATAAGATTGAAAGAAAGTTCGGCGTGTTCAGCAAGTTGGATGCTTGTACATTTGTTGTAAATGTGTATGATGAGGGAAATATCTTAAGTATAGTTACAGATTGCTCCCCTCATGGTACTCATGTTGCTGGTATTGCTTCTGCTTTCCACCCAAAGGAACCCTTGTTGAACGGAGTTGCTCCCGGTGCACAACTGATATCTTGTAAAATTGGAGACACACGTTTGGGGTCAATGGAGACTGGAACCGGGCTGACTCGAGCGTTGATAGCAGCTGTGGAGCATAAATGTGATCTCATAAATATGAGTTATGGTGAGCCGACATTACTTCCGGACTATGGTCGCTTTATTGACCTTGTAAATGAGGCAGTAAACAAGTACCGGTTAATATTTGTGAGCAGTGCTGGTAATAGTGGACCAGCTTTGAATACTGTTGGCGCTCCTGGTGGCACAAGTTCAAGCATTATAGGAGTTGGTGCTTATGTTTCTCCATCGATGGCTGCTGGTGCTCATTGTGTGGTTGAAGCTCCCAGTGAAGGGCTTGAATATACTTGGTCGAGTCGTGGACCAACAGCAGATGGAGATCTTGGTGTTTGTATAAGTGCTCCTGGTGCTGCTGTTGCTCCTGTTCCTACATGGACCCTTCAAAGACGAATGCTTATGAACGGAACCTCTATGGCGTCTCCATCTGCTTGTGGGGGTATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTCCTGTGAGCCCATACCTTGTGAGGAAGGCTCTTGAGAATACTACCATTCCGGTAGGTTGCTTACCAGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATAAGGAAGTCCCAGAATGTTCCTTATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCCACAACCCGAGGAATTTACTTAAGAGAGGCTAGTGCCTGCCGTCAAAGTTCTGAGTGGACAGTACAAATCGAACCTCAGTTTCATGAAGATGCAAATAACTTAGATGAGTTGGTCCCTTTTGAGGAGTGTATCGCGCTGCATTCCAGTGAGAAAACAGTAGTCACTGTTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAACGTAGTGGTTGATCCTTCAAATCTTAGTGATGGCCTGCACTACTATGAACTCTATGGCGTTGATTGCAAGGCTCCTTGGCGAGGCCCTCTTTTCAGGATCCCAGTAACTATAACAAAGCCAGTAGTTGTGGTGGATCGCCCCCCAATAGTTTCTTTTCCAAGAATGTCGTTTCTACCAGGCCATATAGAACGGAGATTTATAGAGGTACCACGTGGTACTAGTTGGGTTGAAGCAACAATACAAACAACAGGATTTGACACAACGAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAGAGGCCTTTGAAGTGGGAAAGTGTGGTAACTTTCTCGTCTCCTGCTTCCAAAAGTTTTTGTTTTCCTGTTGTGGGTGGCCAGACTATGGAACTAGCAATTGCTCAATTTTGGTCAAGTGGCATTGGAAGTAGGGAATCATCACTCGTTGATTTTGAGGTAACATTTCATGGGATTAGTACCAATAAAGATGAAATAGTGCTTGATGGAAGTGAAGCACCCGTTAGAATTGATGCTGAAGCTTTGTTGGCATCAGAAAAACTTACTCCTGCGGCCATCCTGAACAAGGTAAAAGTTCCATATCGGCCATGTGAAGCCAAACTTTGCACACTGCCTACAGATCGTGACAGATTGCCATGTGGAAAACAGATTTTATCACTAACTCTTACTTACAAGTTCAAATTAGAAGATGCTGCCGAAGTGAAACCTTCTATTCCATTGTTTAATGACCGGATATATGACAACAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAATAAGCGTATTTATGCAACTGGTGATGCATACCCAAAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACAGCTGCATATAAGGCACGAGGACGTGCAATGTCTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGACGAGAAGGATTCCATTAAATTGAGCTTTTTCTCTCTACCTGATGGTCCTATGATGGGGAATGGTGCTTACAAATCCTCAGTTTTAGTTCCTGGGAAAAAAGAAGCATTCTATTTGGGCCCACCATCAAAAGATAAGTTTCCCAAGAATTCTCCTCATGGGTCGGTTCTGTCGGGAGCTATCTCATATGCAAAGCTAGGTATTTTTAGTTCAAACGTTAAGGAAAATTCACGGAAGATGCCTGTATATTATCAACTCTCCTTCATAGTGCCACCAACTAAGCCCGATGAAGACAAGGGTAAAGGTTCTTCTCCAGCCTTGACAAAGACAATCTCTGAGCGTCTGATGGAAGAGGTCCGTGATGCGAAGATCAAAGTACTTTCAAGCCTAAAACCAGAAAAAACTGAAGATTTTGCAGAATGGAAGAAGTTGTGCTCATCCCTCAAGAGTGAATATCCAAAATACACTCCGCTGCTTGCAAAAGTATTGGAAGGTTTGGTTTCTCAGAGAAATGTTGGGGATAGAGACTGCCATGCGGAAGAGGTCATTGATGCTGCAAACGAGGTAGTTGAGAGCATAGACAGAGATGAGTTGGCCAAATATTTTGCACTGAAAAATGATCCTGAAGATGAAGACGTGGAGAAACTTAAGAAGAAGATGGAGGTTACCCGGGATCAATTGGCAGAGGCACTATACCAAAAAGGGCTTGCGTTGGCAGAATTGGAGTCTTTAAAGACCAAGGTTGAGAATGCTTCGACACTTGCTTCAAAAGACGCAATAGATGCTGGGAAATCTGAGGATTCTTTTGAAGAGAATTTCAAAGAACTGAAGAAATGGGTAGATGTCAAGACCTCTAAGTTCGGAACTCTTGCAGTGTTGCGCGAAAAACGCCGTGGAAGGCTAGGTGCAGCTCTGAAGGTAGTTAATGATGTTATTGAAAACGACGGAGATACTCCGAAGAAGAAACTCTACGAACTGAAGCTGTCTTTGCTCGAGGAGATCGGTTGGTCTCATTTGGTATCATATGAAAAGCAATGGATGCATGTACGCTTTCCCACAACCCTGCCTCTATTTTAA 4098 43.56 MQNAPLLLHFPILPSPFSLSSISATASASALPYFSSLIRSRVTAPNSRVSVLPRGVCLRAMPSTGGGDGDVNGGAFSGFSLSESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDISKVVKADADGCIIGASGASLVVNSSWKNPSGEWHVGYKFVYELFTDTLISRLKRERKKEWDEKNQEEIAKAVKVLDEFDQKHTKVEDPNLKRVREDLQCRVDILKKQAECYDDKGPIIDAVVWHDGEVWRVALDTQSLEDEPDSGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIASAFHPKEPLLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVCISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENIPVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSQNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQSSEWTVQIEPQFHEDANNLDELVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNVVVDPSNLSDGLHYYELYGVDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGTSWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGISTNKDEIVLDGSEAPVRIDAEALLASEKLTPAAILNKVKVPYRPCEAKLCTLPTDRDRLPCGKQILSLTLTYKFKLEDAAEVKPSIPLFNDRIYDNKFESQFYMISDANKRIYATGDAYPKFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLDEKDSIKLSFFSLPDGPMMGNGAYKSSVLVPGKKEAFYLGPPSKDKFPKNSPHGSVLSGAISYAKLGIFSSNVKENSRKMPVYYQLSFIVPPTKPDEDKGKGSSPALTKTISERLMEEVRDAKIKVLSSLKPEKTEDFAEWKKLCSSLKSEYPKYTPLLAKVLEGLVSQRNVGDRDCHAEEVIDAANEVVESIDRDELAKYFALKNDPEDEDVEKLKKKMEVTRDQLAEALYQKGLALAELESLKTKVENASTLASKDAIDAGKSEDSFEENFKELKKWVDVKTSKFGTLAVLREKRRGRLGAALKVVNDVIENDGDTPKKKLYELKLSLLEEIGWSHLVSYEKQWMHVRFPTTLPLF 1365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7858332 7880495 + Carg23183-RA Car15g01007 162844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01007 1365 Pfam Tripeptidyl peptidase II 873 1057 IPR022229 -
Car15g01007 1365 Pfam Subtilase family 110 569 IPR000209 GO:0006508|GO:0008236
Car15g01007 1365 ProSitePatterns Serine proteases, subtilase family, serine active site. 530 540 IPR023828 -
Car15g01007 1365 Coils Coil 1220 1240 - -
Car15g01007 1365 Coils Coil 247 267 - -
Car15g01007 1365 ProSitePatterns Serine proteases, subtilase family, histidine active site. 346 356 IPR022398 -
Car15g01007 1365 ProSiteProfiles Serine proteases, subtilase domain profile. 84 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01007 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - csv:101220162 2424.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01007 Car_Chr15 FPKM 17.695881 17.590225 21.685743 20.134174 12.496393 11.931923 13.995834 14.062094 14.879821 16.081049