Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01028 ATGGCTACTTCTCTAGTACCCAGATCCTTGTTTCGCATTCTTTATCTCTTCCCCACAAGCCCTTTTACTTTGAACCCTCAATCGATCAATCCCTTGAAGTTCTCTGCAACTCGAGCTATGAGTTCCGCGTCAACTCAGCGCCTTTTCCAGCTAAAATTTGATCCACTTACGGGTAACTCGGAATGGGTAGTCATAGAAGAAGAGGTTGACGGAGTTTCAGAGAATACCCAGAAACCCATTTTGGCGACAACTTCATATTTGGATATGCTTAATGATGCCACTAGAAACAGAGCGTTTCGCGAAGCCATTGATAAGACTATATCAAAACCTTGCCGTGTTCTTGATATTGGTGCTGGAACTGGTTTGCTATCAATGATGGCTGCACGGGCAATGGACTCTGCCGTGGGTGATTCCAAGGGAATGGTTACGGCTTGTGAATCCTATCTTCCAATGGTGAAGTTAATGAAGAAAGTCTTGCGTCTTAATGGGATGGAAAGGAAAGTAAAAGTTATTAACAAACGCTCTGATGAACTTCAGTTTGGTTCTGATATCATTTCTCGAGCTGATGCCCTTGTTAGTGAGATTTTGGACTCAGAACTGTTAGGCGAGGGGCTTATACCGACGTTGCAACATGCACATGACAAGCTTTTAGTGGAAAATCCATTGACTGTGCCGTACAGAGCCACCATATACGGCCAGCTGGTTGAAAGCACATACTTATGGAAGCTTCATGATTTATATAACAATGAAGCAAAAGCATGTGATGCCATCCATCTCGTTCCAGAAGGGATGGATCCTATCATATGTGTTAGGCCACAGCAATATCCAATGCATTGTGATGCAATTGCCAAAGAAGTGAAGCTGCTCTCAGAACCCTTCAGGGTTTTTGAATTTGATTTTTGGAAACGTCCAGAGAGTCATGCTGAAAAGGAGTTGCACATCAAAGCAACTGACGGTGGTAGAGTTCATGCTGTAGTGTCATGGTGGATGCTGCAGCTCGATCGTGAAGGAACGGTCTTTTATTCCACTGCCCCGAAGTGGATATCTCCACCTTTCAACATAGACAATGGTGTGTCAATATCCAAGGATGAACAAGTTGACTTGCTTATCAGTGAACCATTCTACTATGGTAATGACAATGCACTCCCATGGCACAACCTGCGGAAGGAGCGGACGATGCTCGATTCAGTCCTATCTGATGATGCGCTAATAATGCCAAGTAAAGGCATATTGCGAGCTTGTTTCATGTCATTGCCTGATCTATGGAGCAGCCGTCGTCGATTGAGAACAATCGAAGGCTTTGATCACTCTGTTACAAATGACACTTTAGGAGCTTGTGGTGAGTTACCTGAAGGACAAGAAGGCCCATGCCTGGCTTTTTACATTTGGCAGTGTGGAGAATACGAGGAACTCAGTGAGATATTTACAGTGATGGAGTTTGATTTCTCAAAACCAATAAGCCCCTGTAGTGGGAAAAGCCAGATAAGAGATACTGGAAACAAGGAGTTAAGCTTCTTGCCAACCCCGTGGCAGTTGGAGCTCGAGGCTCCGCTCATGGCGTCGAATGCTGCTCTGCTGTCATCGAAGCATCCTTTGATCCATCGACGGGTGAACTCGACGTACAACATTCTTTTTTGTAATACAACGAAGCTTTTGGCTCTCGATCTGAAACGGATGACAAAATGTGACTGA 1692 44.62 MATSLVPRSLFRILYLFPTSPFTLNPQSINPLKFSATRAMSSASTQRLFQLKFDPLTGNSEWVVIEEEVDGVSENTQKPILATTSYLDMLNDATRNRAFREAIDKTISKPCRVLDIGAGTGLLSMMAARAMDSAVGDSKGMVTACESYLPMVKLMKKVLRLNGMERKVKVINKRSDELQFGSDIISRADALVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVPYRATIYGQLVESTYLWKLHDLYNNEAKACDAIHLVPEGMDPIICVRPQQYPMHCDAIAKEVKLLSEPFRVFEFDFWKRPESHAEKELHIKATDGGRVHAVVSWWMLQLDREGTVFYSTAPKWISPPFNIDNGVSISKDEQVDLLISEPFYYGNDNALPWHNLRKERTMLDSVLSDDALIMPSKGILRACFMSLPDLWSSRRRLRTIEGFDHSVTNDTLGACGELPEGQEGPCLAFYIWQCGEYEELSEIFTVMEFDFSKPISPCSGKSQIRDTGNKELSFLPTPWQLELEAPLMASNAALLSSKHPLIHRRVNSTYNILFCNTTKLLALDLKRMTKCD 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8024384 8032122 - Carg23204-RA Car15g01028 162865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01028 563 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 65 394 IPR025799 GO:0016274|GO:0018216
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01028 K11438 PRMT7; type III protein arginine methyltransferase [EC:2.1.1.321] - csv:101204902 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01028 Car-Chr15:8024384 Car18g00780 Car-Chr18:8799628 1.51E-07 dispersed
Car15g01028 Car-Chr15:8024384 Car11g00562 Car-Chr11:3014542 1.17E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g537 . . . . . . . Bma14g00044 . . . Cma15g01123 . Car15g01028 . . . . . . . . . . . . . . . . . Cone8ag0397 Cone12ag0382 . . . Csa05g00421 Chy09g01088 . Blo03g00418 . Bda07g00034 . . Bpe11g00269 . . . . Cmo15g01183 . . . . . Cpe13g00233 Bhi12g00454 . . Lac11g2283 . . . Cla01g00397 Cam01g0415 Cec01g0406 Cco01g0427 Clacu01g0416 Cmu01g0397 Cre09g2115 Lsi09g00423 . . Cme09g01617
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004964 2 7 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01028 Car_Chr15 FPKM 16.557274 18.260763 18.464422 17.2416 21.87698 21.953466 23.124268 87.560669 93.341553 88.926651