Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01030 ATGGGCGGCACGTGTTTTGCTTCACCCTCCCTTGGACGCAGCACGTTCGCCATTGTTGCTCCTCTCTTTAATCGATCGGTTCGGGAAACTTGCTCGCAAGCAAACTCATTTCCAGATTCTTTTTCTCTCTTCAATTTCATCTTCCTCTCTTGTTCCTGGTTCAATCTTCCAAGAATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTTCGAATTGAAGAAGCAGATCTGTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTGCGTTGCATTTAAGGTGAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGATCAACATGCGATGTTATAGTCACAATGCAAGCCCAGAAAGAGGCTCCTCCTGATATGCAATGCAAAGACAAATTCCTCCTTCAGAGTGTTAAAACCGCTGATGGCGTAACCGCAAAGGATATCAATGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAATTGAAAGTCGTTTATGTTTCTCGGCCGCAACCACCTTCTCCAGTACCAGAAGGTTCCGAAGAAGGGTCCTCCCCAAGAGGTTCTTTTTCAGAGAATGGAAACTTCAATGATGCTGATTTGAACACTGCCACGAGGGGATACGTTGAACGGTCGGAGCCCCAGGATAAATCTGCCGAGGCTAGAGCCCTCATAGCAAAACTCACAGAGGAAAAGAATAATGCCATGCAACAGAATAACAAGCTTCGTCAGGAATTGGAACTTTTGAAGCGTGAAAGCAGGAAAAATGCCGGTGGCGTCTCCTTCCTGTTCATCATATTAACCGGATTGATTGGAATCATCCTTGGCTATATTATGAAGAAGACTTGA 900 45.78 MGGTCFASPSLGRSTFAIVAPLFNRSVRETCSQANSFPDSFSLFNFIFLSCSWFNLPRMSTGELLSIEPLELKFPFELKKQICCSLQLSNKTESCVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQSVKTADGVTAKDINAEMFNKEAGHVVEEFKLKVVYVSRPQPPSPVPEGSEEGSSPRGSFSENGNFNDADLNTATRGYVERSEPQDKSAEARALIAKLTEEKNNAMQQNNKLRQELELLKRESRKNAGGVSFLFIILTGLIGIILGYIMKKT 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8037278 8040741 + Carg23207-RA Car15g01030 162867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01030 299 MobiDBLite consensus disorder prediction 187 218 - -
Car15g01030 299 Coils Coil 235 269 - -
Car15g01030 299 MobiDBLite consensus disorder prediction 201 218 - -
Car15g01030 299 Pfam MSP (Major sperm protein) domain 65 169 IPR000535 -
Car15g01030 299 ProSiteProfiles Major sperm protein (MSP) domain profile. 64 184 IPR000535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01030 - - - cmax:111468836 516.153
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01030 Car16g01047 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00109 Car-Chr2:677813 Car15g01030 Car-Chr15:8037278 2.09E-10 dispersed
Car03g00441 Car-Chr3:4912488 Car15g01030 Car-Chr15:8037278 3.05E-07 dispersed
Car08g00750 Car-Chr8:4876957 Car15g01030 Car-Chr15:8037278 2.94E-90 dispersed
Car09g00816 Car-Chr9:4949692 Car15g01030 Car-Chr15:8037278 2.12E-10 dispersed
Car14g01480 Car-Chr14:12277835 Car15g01030 Car-Chr15:8037278 6.07E-46 dispersed
Car15g01030 Car-Chr15:8037278 Car16g01047 Car-Chr16:8992449 3.28E-08 dispersed
Car16g00587 Car-Chr16:3700790 Car15g01030 Car-Chr15:8037278 7.39E-12 dispersed
Car15g01030 Car-Chr15:8037278 Car17g00442 Car-Chr17:2968325 1.07E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01030 Car_Chr15 FPKM 22.033716 25.149126 18.585756 21.794966 20.666336 23.285921 21.935081 32.946323 33.579441 31.159954