Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01033 ATGGAGAAGAGTTCATCAGCATCTTCCTTAGGTCCAGGCGGCCTTGACATTTCGCAGGCTTTCTTCAAGCCTGTAAGCGACGCCTCTCCGCCGTCTACCTCTAAGCGCAACACCAAAATCTCCGTCATCGGCGCTGGAAATGTCGGCATGGCCATTGCTCAGACCATCCTCACTCAAGATCTTGCCGATGAACTCGTCCTTGTCGACGCCAAGCCTGACAAACTCCGAGGCGAAATGCTCGATCTCCAACACGCCGCTGCTTTCCTTCCACGCACTAAAATCAGCGCCTCTACCGATTACTCTGTTACTGCCGAGTCCGATCTTTGCATCGTCACTGCTGGTGCTCGCCAGATCGCTGGTGAATCTAGGTTGAATCTGCTGCAGAGGAATGTTGCTCTGTTTCAGAAGATCGTGCCGCCGCTTGTTCAGTACTCTCCCGAGACGATTCTGCTGATCGTTTCGAATCCGGTGGATGTTTTGACTTATGTTGCTTGGAAGCTCTCTGGTTTTCCGTCGAATCGAGTGATTGGATCGGGAACGAATCTGGATTCGTCTAGGTTTCGGTTTCTCATCGCTGATCATCTCGACGTTAACGCTCAGGATGTTCAGGCATACATAGTGGGAGAGCACGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGCGTGGGCGGAGTGCCAATACTGAGCTTTCTACAGAATCAACAAATCACCTACGAGAAGGAAACATTAGAGAGCATTCACAAAGAGGTCATAGGCGGGGCTTATGAAGTGATAAACTTGAAGGGCTACACATCGTGGGCGATCGGCTACTCGGTGGCAAGCCTCGCCCGGTCGCTCCTCCGTGACCAGCGTAGGATCCACCCTGTCTCTGTCCTTGCTAAAGGGTTCTACGGCATCAATGGAGGTGAGCTGTTCCTCAGCCTGCCCGCGCAGCTTGGTAGGGGCGGAGTATTGGGGATCACCAATGTGCATCTAACCGACGAGGAGTCGGGACGGCTGAGGGACTCAGCCAACACCATCTTGCAGGTGCAGACCCAGTTGGGGATCTGA 1053 53.56 MEKSSSASSLGPGGLDISQAFFKPVSDASPPSTSKRNTKISVIGAGNVGMAIAQTILTQDLADELVLVDAKPDKLRGEMLDLQHAAAFLPRTKISASTDYSVTAESDLCIVTAGARQIAGESRLNLLQRNVALFQKIVPPLVQYSPETILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLQNQQITYEKETLESIHKEVIGGAYEVINLKGYTSWAIGYSVASLARSLLRDQRRIHPVSVLAKGFYGINGGELFLSLPAQLGRGGVLGITNVHLTDEESGRLRDSANTILQVQTQLGI 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8049745 8051441 + Carg23210-RA Car15g01033 162870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01033 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Car15g01033 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Car15g01033 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Car15g01033 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Car15g01033 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Car15g01033 350 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Car15g01033 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Car15g01033 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 350 - -
Car15g01033 350 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
Car15g01033 350 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
Car15g01033 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 342 IPR022383 GO:0016616
Car15g01033 350 Gene3D - 34 179 - -
Car15g01033 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 177 IPR036291 -
Car15g01033 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Car15g01033 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Car15g01033 350 PANTHER L-LACTATE DEHYDROGENASE 1 350 - -
Car15g01033 350 CDD LDH_1 35 347 - -
Car15g01033 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01033 K00016 LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27] - csv:101217863 640.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01033 Car-Chr15:8049745 Car11g00152 Car-Chr11:851954 1.39E-06 dispersed
Car15g01033 Car-Chr15:8049745 Car02g01305 Car-Chr2:8685461 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g521 . . . . . . . Bma14g00041 . . . Cma15g01128 . Car15g01033 . . . . . . . . . . . . . . . . . . . Cone6ag0679 Cone9ag0684 . Csa05g00415 Chy09g01095 . Blo03g00416 . Bda07g00006 . . Bpe11g00266 . . . . Cmo15g01187 . . . . . Cpe13g00228 Bhi12g00434 . . . . . Lcy12g1823 Cla01g00391 Cam01g0408 Cec01g0400 Cco01g0421 Clacu01g0409 Cmu01g0390 Cre09g2120 Lsi09g00417 . . Cme09g01623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004596 1 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 4 2 1 1 3 1 1 1 1 1 1 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01033 Car_Chr15 FPKM 21.824903 21.999451 14.954625 14.802854 10.863091 10.16642 8.604579 16.122744 17.050549 16.961666