Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g01044 | ATGTCATCCTCTTCCTCTTCTTCTTCTCCTACTTCTACTGCTACTGCTACCACTACCACTACCACTACCTTGTCTCAGCAGCAGCTGCTGGACCACCACCTTCCCGCCGCAGCTGAGCAGCTCTGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGACACTGCACTAATCTCCTGCCTGTCAACATGCGTGGCCTGCTCCTCCCTTCACCTAATCAATTTCATCACCTTGGCCACTCCCATAACATTCTGGAAAACATCCCCACTCCAAACCCCAATTATCTGATCAACCAGTTTGCAGCCACCAACAATTTTGTAACGCCATCTCGTGGAGTCATTGATGAGCTCCCCAGGCCCCCTGTCATCAACAGACCTCCAGAGAAGCGACAGAGAGTGCCATCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCAGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAACATCCGCCAGCAGGAAGCAGAGCAGAGTGTTCTAATGAAAGACAATGGAGGATTCTATACCTCAGCAGCAGCCAACGTTGGTGTCTCCCATTTCTAG | 711 | 49.93 | MSSSSSSSSPTSTATATTTTTTTLSQQQLLDHHLPAAAEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHHLGHSHNILENIPTPNPNYLINQFAATNNFVTPSRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEAEQSVLMKDNGGFYTSAAANVGVSHF | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 8220769 | 8222486 | - | Carg27385-RA | Car15g01044 | 162881 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g01044 | 236 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Car15g01044 | 236 | Pfam | YABBY protein | 37 | 195 | IPR006780 | GO:0007275 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00681 | Car15g01044 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01775 | Car-Chr4:10145112 | Car15g01044 | Car-Chr15:8220769 | 2.73E-43 | dispersed | |
| Car05g00019 | Car-Chr5:110295 | Car15g01044 | Car-Chr15:8220769 | 1.41E-39 | dispersed | |
| Car05g01205 | Car-Chr5:11394486 | Car15g01044 | Car-Chr15:8220769 | 9.22E-53 | dispersed | |
| Car10g00501 | Car-Chr10:2522223 | Car15g01044 | Car-Chr15:8220769 | 3.73E-49 | dispersed | |
| Car11g00415 | Car-Chr11:2339258 | Car15g01044 | Car-Chr15:8220769 | 9.33E-37 | dispersed | |
| Car12g01175 | Car-Chr12:11290190 | Car15g01044 | Car-Chr15:8220769 | 1.82E-50 | dispersed | |
| Car15g01044 | Car-Chr15:8220769 | Car18g01013 | Car-Chr18:10558350 | 1.35E-39 | dispersed | |
| Car15g01044 | Car-Chr15:8220769 | Car02g01316 | Car-Chr2:8745490 | 2.80E-131 | wgd | |
| Car15g01044 | Car-Chr15:8220769 | Car06g00681 | Car-Chr6:4056093 | 1.58E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4863 | PF04690 | YABBY | 5.50E-70 | CL0114 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g01044 | K25796 | - | csv:101214748 | 379.407 |