Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01050 ATGTGTTCTGTTATTACCATTACTTCTGAAATTGTGCATTCAAATATATTGGGAATATTGCAGAATTACATCATTTCTTACATACAGGGTTATCGGATCATTTCTGTTGATATTCCACGTGTATGGAATCATCAAGAGTGGATTCAAGCATTTGAAAAGTTCTTGGATGCTATAGATGTTCATCATATACATCTCTATGGCACTTCACTCGGGGGCTTTCTAGCACAACTTTTCGCTCAACATCGGCCAAGACGTGTTAAATCTTTGATATTATCTAATTCGTTTATCGAGACTAAAAGTTTTTCTGCAGCAATGCCATGGGCTCCAATTGTTAGTTGGGCCCCATCTTTTTTGCTGAAAAGGTATGTCTTAACAGGAATTCGTGATGGTCCGCATGAACCTTTTATCGCCGATTCTGTAGACTTTGTTGTTTCTCAGGTGGAAATGCTTTCTAGAGAAGATTTGGCTTCAAGGCTGACCCTAACAGTTGATGATGCCTCAATTGGACCTCTTCTTCTTCCAGATTCGTCTATTACCATAATGGATACAAATGACTATTGTGCGGTTCCACTGCAACTCAAAGATCAACTGAATGAAAGATATTCTGAAGCCAGAAGAGCATACTTGAAAACAGGGGGCGATTTCCCATTTCTTTCACGCCCTGATGAAGTAAACTTGCATCTTCAGCTGCACTTGAGACGTGTTGGGGTAGAAGCACGGCCAGATTTGGTTCAGGTTGTCCCAAAAGCAGATAGTGATAGTGGTCCTAGTGAAAAGAAGGATGAAAGAGGTGGTGATGATGATACACACGAGGATGACAATGAACGCAATGGAAGTTCACCTTCCGAAAACCAAACACCTCCAGCCCCAGAGAGTTCTGAATCTCATAGTATAGAGGATCGTCTACTTGACAATGCTGAAGCTTGTTATTTGGCTAATGAGATGCTTTTATCTACTCACGGAGAAAATAAAGTGCTCGTGGCAGTATTACTACTACATTACATTCAGATGATTTATGTAGGTTGTTTGATGCCAGGCATAAAGGATGCTGGTTCAAGTCACCTGTTGTCATTCATACCGAACTGGTAG 1089 40.77 MCSVITITSEIVHSNILGILQNYIISYIQGYRIISVDIPRVWNHQEWIQAFEKFLDAIDVHHIHLYGTSLGGFLAQLFAQHRPRRVKSLILSNSFIETKSFSAAMPWAPIVSWAPSFLLKRYVLTGIRDGPHEPFIADSVDFVVSQVEMLSREDLASRLTLTVDDASIGPLLLPDSSITIMDTNDYCAVPLQLKDQLNERYSEARRAYLKTGGDFPFLSRPDEVNLHLQLHLRRVGVEARPDLVQVVPKADSDSGPSEKKDERGGDDDTHEDDNERNGSSPSENQTPPAPESSESHSIEDRLLDNAEACYLANEMLLSTHGENKVLVAVLLLHYIQMIYVGCLMPGIKDAGSSHLLSFIPNW 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8299306 8304417 + Carg16693-RA Car15g01050 162887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01050 362 MobiDBLite consensus disorder prediction 279 293 - -
Car15g01050 362 MobiDBLite consensus disorder prediction 243 298 - -
Car15g01050 362 Pfam alpha/beta hydrolase fold 40 99 IPR000073 -
Car15g01050 362 MobiDBLite consensus disorder prediction 253 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01050 K19367 SPG21; maspardin - csv:101212583 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01050 Car-Chr15:8299306 Car02g01263 Car-Chr2:8483796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g487 . . . . . . . . . . . Cma15g01162 . Car15g01050 . . . . . . . . . . . . . . . . . . . . . . Csa05g00378 Chy09g01134 . . . . . Bpe08g01448 . . . . . Cmo15g01223 . . . . . Cpe13g00211 Bhi12g00377 . . Lac11g2222 Hepe06g1638 . Lcy12g1761 Cla01g00351 Cam01g0367 Cec01g0363 Cco01g0377 Clacu01g0370 Cmu01g0350 Cre09g2160 Lsi09g00378 . . Cme09g01665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007275 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 4 1 2 2 1 1 1 1 1 3 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01050 Car_Chr15 FPKM 0.826686 0.0 1.956282 1.049102 1.068635 1.753904 1.758973 0.952157 1.131702 1.045541