Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01060 ATGGCAGTCTCTTCTGCTCAGTGTCTTCAACCTCAGATTAATGTTTCCCAGCCTTCTCTCAGCGTTGCGACGAAGGTTTTCTCGGGACTGAAGCTTCAATCTGCTAGTCCATTCGGAGGAGCAAAACCTAATATTACTACTGAATTCGATGGAAAAGTTCATAAAAGTCTACAAGCCAGTATCGAGAACGAGTTGTCTTCATTGGGCAGAACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCCACAATACTATATCTTGACAGCATTGAAACTTCCAAAAAAACTCTACATGTACATAAATGGCCCAGGTGGAGATAGTTTGCAGAGTCCTGTAGCTACCCATTGCGTGGGTTGTGCCTATAATCTGGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGTAAATACTTCAATTTGTATTGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGATTATCAAGGACATGAATCGAATGAAGCGATTTACTGCTCAGCAAGCTCTTGATTATGGACTCATAGACCGTATAGTTAGGCCACCTCGCATTAAGGCTGATGCACCTCGCAAGGATCCTGAAAGTGAGAATTTCCTAAAAAGTAAAAGATTAATTTGCAATTTTCACTCATTTCGTATCTATTATTGTGTCCACTTTGACCAAATTTCATATATGAAACATATTAAAAATGGTTCACATTATATCAAACTATTC 744 40.73 MAVSSAQCLQPQINVSQPSLSVATKVFSGLKLQSASPFGGAKPNITTEFDGKVHKSLQASIENELSSLGRTLMKSLAIKFWPQYYILTALKLPKKLYMYINGPGGDSLQSPVATHCVGCAYNLAAFLLAAGEKVNTSICIGNRSAMPLSRIALQPPSGAARGQIIKDMNRMKRFTAQQALDYGLIDRIVRPPRIKADAPRKDPESENFLKSKRLICNFHSFRIYYCVHFDQISYMKHIKNGSHYIKLF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8348321 8351819 + Carg16683-RA Car15g01060 162897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01060 248 Pfam Clp protease 67 164 IPR023562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01060 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101210460 218.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car15g01060 Car16g01144 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01060 Car-Chr15:8348321 Car14g00851 Car-Chr14:5015499 4.62E-10 dispersed
Car15g01060 Car-Chr15:8348321 Car02g01271 Car-Chr2:8522639 1.41E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0026087 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01060 Car_Chr15 FPKM 2.82214 3.845479 3.543735 4.809331 2.90135 2.569698 3.064843 4.325672 3.403111 4.322455