Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car15g01061 | ATGGAGGGAAGGGACGGTGGTGCAAGTAGTGGGGTTACTGTAGTTGGATCAGATGCTCCGTCCAAGTACCAAATAGCACCCAGGACCTCCGATAGCCCACCGCAGAGCGGTGGATCAACGCTGCCACCGGCGACTCAACCAACTTCCACGCCGTCGGCCTCGGCGCAGGTACCTGCGCAGCCTACGGCACCCACGGGGGCCTCCTCTGTTCCGGGAAAGAAGAAAAGAGGGAGGCCGAGAAAATATGGACCCGATGGCTCTGTTAATATGGCTCTGTCTCCCAAGCCGATATCGTCGTCGGTGCCGCCGCCGGTGATTGACTTCTCGGCGGAGAAGAGGGGGAAAGTCCGGCCGGCGAGTGGTGTGAACAAAACCAAATTCGAAGTGGATAATTTAGGCGATTGGGTGGTTCCATGTTCTGTTGGTGCAAATTTTACGCCTCATATCATCACTGTCGATGCGGGCGAGGATGTTACGATGAAGATAATATCGTTTTCTCAACAAGGGCCTCGAGCGATATGCGTTTTATCTGCTAATGGTGTGATCTCGAGTGTCACTCTTCGTCAGCCTGATTCGTCTGGAGGAACATTAACATATGAGGGTCGATTTGAAATACTATCCTTATCTGGCTCGTTCATGCCGAGTGACAATGGAGGAACTAGAAGTAGATCGGGTGGAATGAGCGTTTCCTTAGCAAGTCCAGACGGGCGGGTCGTAGGCGGTGGAGTTGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTTTCTGGAAACCAACATGAGCAGAAACCTAAAAAGCCAAAACAAGATACTAATTCAACTGCTCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGACCCTAAAGCGAACCTCTCGCCGTCCAGTCCCTTTCGTGGCGATAACTGGTCGACGCTGCCAACCGATTCGAGGAATAATAAGCCAACTGATATCAGTGTATCCCTACCCAGTGCT | 993 | 52.06 | MEGRDGGASSGVTVVGSDAPSKYQIAPRTSDSPPQSGGSTLPPATQPTSTPSASAQVPAQPTAPTGASSVPGKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSAEKRGKVRPASGVNKTKFEVDNLGDWVVPCSVGANFTPHIITVDAGEDVTMKIISFSQQGPRAICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKANLSPSSPFRGDNWSTLPTDSRNNKPTDISVSLPSA | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 8352036 | 8354089 | - | Carg16682-RA | Car15g01061 | 162898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car15g01061 | 331 | MobiDBLite | consensus disorder prediction | 262 | 331 | - | - | |
| Car15g01061 | 331 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 147 | 260 | IPR005175 | - | |
| Car15g01061 | 331 | MobiDBLite | consensus disorder prediction | 295 | 331 | - | - | |
| Car15g01061 | 331 | ProSiteProfiles | PPC domain profile profile. | 142 | 283 | IPR005175 | - | |
| Car15g01061 | 331 | MobiDBLite | consensus disorder prediction | 1 | 103 | - | - | |
| Car15g01061 | 331 | MobiDBLite | consensus disorder prediction | 23 | 67 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g00971 | Car15g01061 | CCT | |
| Car15g01061 | Car16g00986 | CCT | |
| Car15g01061 | Car16g00986 | ECH | |
| Car06g00971 | Car15g01061 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car15g01061 | Car-Chr15:8352036 | Car01g01608 | Car-Chr1:13213409 | 6.06E-67 | dispersed | |
| Car14g01784 | Car-Chr14:13966301 | Car15g01061 | Car-Chr15:8352036 | 3.51E-102 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car16g00986 | Car-Chr16:8368895 | 8.31E-125 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car18g01102 | Car-Chr18:11045895 | 2.80E-85 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car02g01272 | Car-Chr2:8526097 | 1.06E-160 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car06g00668 | Car-Chr6:3979908 | 4.53E-112 | wgd | |
| Car15g01061 | Car-Chr15:8352036 | Car06g00971 | Car-Chr6:7448183 | 9.87E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car15g01061 | - | - | csv:101210208 | 533.487 |