Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01064 ATGGCCGCTTCTGGGGGTACTAGTAATAGAAATGGTGCCAATTCCAGAAACTCTCTTAAGCTTGATAAGCCCTTTTCTCCTAATTCCAACCCCAATTCTTCTCTCAAGTCAAAGTCTCTTCCCAATTCTGCTCTGAGACGCAGTAGCCCTGCATCTCTTGGTGCTGCCAAGAATGATGGTGGAGTTCCTGGAAGAGTTCGAGTAGCTGTTAGATTGCGACCACGCAATTCAGAAGAATTGATAGCTGATGCTGATTTTGCTGATTGCGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTCCTGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGCCGTGGTGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACTGGTAAAACGTATACTCTTGGAGGACTTGGAGAGGAAGACACGGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACGGATTCTGTCATGGTATCCTACCTGCAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTTGAAGATCCTAAAACGGGAGATGTTTCGTTACCTGGGGCTAGCCTTGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGTTTTGCTGCGAATACGAAACTAAACACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACATGTAAAGCGGTCTTTGAAGGGAAAGGATTCAACTCTGGGAAGTGACATTGGTGGGCATTCTCATTTGGTTAAGACCTTGAAAGCTCCTATTGTTCGGAAGGGAAAGTTAGTGGTGGTGGATCTTGCTGGTTCTGAGCGCATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATAAATCTCTCCCTGAGTGCATTAGGGAAGTGCATAAATGCACTAGCCGAGAATAGTGCACACGTTCCAGTTAGGGATTCGAAGCTTACAAGGTTACTCCGGGATTCATTTGGTGGAACAGCTAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGCCATCGTGGAGAGACTACAAGCACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGGTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGATTAGACATTCAATTAGACAAACTGATAGCCGAACATGAAAGACAGAAGAAATCATTTGAGATGGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGAATATCTGAAGCTGAAAGAAGTCATTCGAACGCACTGGAGGGTTCGGTTGAGTGTGCTGATAAGGAAGTTGAGGAGATAAAGAATTTGGTTAAAAAGGAAACGCTTTTGAGGAAGGCAGCTGAAGAGGAAGTTAGCAATCTTAGAACTCAAGTAGCCCAACTGAAGAGATCAGAGACATCTTGCAATTTGGAAATCTCTAAGCTTTGCAAGTCTCTGGAAGATGAGCAAAATCAGAAAAGGAAACTAGAAGGAGATATAGCTGTTCTACAAACCCAGTTGTTGCAATTGAGCTTTGAAGCTGATGAGACCAGTAGGCGACTAGATAGAGGTGAGCCTGGGAAAGTCCTCGGTTCTATAGATTCTCTCGTGCAACAAGTTAAGCACTCACAGGCTCAGGAGCCTGGAAATGGGGAGAAAGCTTCAGTGGCCAAACTCTTTGAGCAAGTGGGACTGCAGAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTTAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATTGTAGAGGCTGGCGGCCTTTCATCCTTGCTGATGCTACTCAGAAACACAGAGGATGAGACAATACACAGAGTTGCTGCTGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGATCTCATTATGTCCCAAGGGGGCATTAGCTTACTGTCCATGACGGCTACCAACGCTGAGGATCCCCAAACCCTTCGTATGGTTGCCGGAGCAATCGCCAATTTGTGCGGCAATGATAAGTTGCAGAAGAAATTAAGGGGCGAAGGTGGTATCAAGGCATTGCTTGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCGAATTTTGCAAAGTGCGAGTCCAGGGCCTCTATACAAGGGAGCAAGGCTGGAAAGTCTTTCTTGATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACGATCAAACGACATATCGAACTGGCACTCTGTCATTTAGCACAACATGAAGTGAACGCAAGGGACATGATGAATGGAGGTGCAGTGAGGGAGCTGGTTCGGATATCGCGAGACTGCTCACGGGAAGACATAAGGAGTCTTGCGCATCGAACGTTAATATCCAGCCCCACATTTCAAGCTGAAACGAGACGATTACGAATAGATCATTGA 2601 44.21 MAASGGTSNRNGANSRNSLKLDKPFSPNSNPNSSLKSKSLPNSALRRSSPASLGAAKNDGGVPGRVRVAVRLRPRNSEELIADADFADCVELQPELKRLKLLKNNWDSDTYEFDEVLTEFASQKRVYEAVVKPVVESVLDGYNGTIMAYGQTGTGKTYTLGGLGEEDTADRGIMVRAMEDILAEVSLETDSVMVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSLPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGKDSTLGSDIGGHSHLVKTLKAPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMVKIKEEFDYKSLSRRLDIQLDKLIAEHERQKKSFEMEIERITKEAQDRISEAERSHSNALEGSVECADKEVEEIKNLVKKETLLRKAAEEEVSNLRTQVAQLKRSETSCNLEISKLCKSLEDEQNQKRKLEGDIAVLQTQLLQLSFEADETSRRLDRGEPGKVLGSIDSLVQQVKHSQAQEPGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRNTEDETIHRVAAGAIANLAMNETNQDLIMSQGGISLLSMTATNAEDPQTLRMVAGAIANLCGNDKLQKKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASIQGSKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNARDMMNGGAVRELVRISRDCSREDIRSLAHRTLISSPTFQAETRRLRIDH 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8370581 8378620 - Carg16679-RA Car15g01064 162901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01064 866 Coils Coil 482 516 - -
Car15g01064 866 Coils Coil 435 455 - -
Car15g01064 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 649 692 IPR000225 GO:0005515
Car15g01064 866 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01064 866 Coils Coil 524 551 - -
Car15g01064 866 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Car15g01064 866 MobiDBLite consensus disorder prediction 1 49 - -
Car15g01064 866 Pfam Armadillo/beta-catenin-like repeat 641 678 IPR000225 GO:0005515
Car15g01064 866 MobiDBLite consensus disorder prediction 1 60 - -
Car15g01064 866 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 608 650 IPR000225 GO:0005515
Car15g01064 866 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01064 - - K10396 csv:101209471 1449.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g00966 Car15g01064 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02467 Car-Chr4:19634157 Car15g01064 Car-Chr15:8370581 7.12E-64 dispersed
Car04g02468 Car-Chr4:19636051 Car15g01064 Car-Chr15:8370581 5.81E-24 dispersed
Car06g00966 Car-Chr6:7408764 Car15g01064 Car-Chr15:8370581 0 dispersed
Car15g00468 Car-Chr15:2514149 Car15g01064 Car-Chr15:8370581 1.05E-96 dispersed
Car15g01064 Car-Chr15:8370581 Car13g00120 Car-Chr13:1047099 2.52E-61 dispersed
Car14g01790 Car-Chr14:14000192 Car15g01064 Car-Chr15:8370581 0 wgd
Car15g01064 Car-Chr15:8370581 Car02g01276 Car-Chr2:8550613 0 wgd
Car15g01064 Car-Chr15:8370581 Car06g00965 Car-Chr6:7406250 2.00E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01064 Car_Chr15 FPKM 4.157321 4.419625 5.767755 4.80823 17.151247 13.973866 14.549291 1.205398 1.417225 1.204459