Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01066 ATGTGCATCAGAGCAACGCAGAGTATTCTATTCCATCAAATTCAGACTTCCAAGAACAAGAGACGATCAAAAAGATCCAAACTTCAAGTTCTAAGGCTTACCAGGAGGAGATGTGAAGAGAAGCTGGGGAAAGACATTGAGCTGAAGAATCTGCAGCTATATCTGAAGAATCAGACCATAATCAAAGAGAATGATAAGCTGAGAGAGAAAGCCAATATCCTTCATCAAGAGAACATAGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGAATCAGAGAAAATGA 291 38.14 MCIRATQSILFHQIQTSKNKRRSKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLKNQTIIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8385834 8386384 + Carg16677-RA Car15g01066 162903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01066 96 Coils Coil 57 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01066 - - - cpep:111796094 150.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01793 Car-Chr14:14017339 Car15g01066 Car-Chr15:8385834 1.73E-10 wgd
Car15g01066 Car-Chr15:8385834 Car02g01279 Car-Chr2:8566897 1.24E-49 wgd
Car15g01066 Car-Chr15:8385834 Car06g00962 Car-Chr6:7397547 1.05E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g458 . . . . . . . . . . . Cma15g01178 . Car15g01066 . . . . . . . . . . . . . . . . . . . . . . Csa05g00358 Chy09g01149 . . . . . . . . . . . . . . . . . Cpe13g00196 . . . . . . . Cla01g00336 Cam01g0349 Cec01g0345 Cco01g0357 Clacu01g0353 Cmu01g0333 Cre09g2177 Lsi09g00362 . . Cme09g01681
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008967 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car15g01066 Car_Chr15 FPKM 0.932489 0.530131 1.072061 0.779007 0.463001 0.266416 0.813413 0.455454 0.463182 1.370151