Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g01071 ATGGCTTCTTCTTTAGGCTTCAATTTCTTCTTCCTGCCATTGGTTTTCGCCATCTTCACCAGACCAACGCTCGCCGTGTTCAGACCAAGCCCGTGGAAGCTCGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGCCACTATGGGAGGAGCATGTGGGTATGGAAACTTGTTTACGAATGGTTATGGAACCGACACAGTAGCGTTGAGCTCGACATTGTTCAACAATGGCTACGCTTGTGGGACATGCTTTCAGATCAAATGCGTGCAATCGAAGGCTTGCTACGCGAACGTGAAATACACCACCGTGACGGCGACAAACCTATGCCCGCCAAATTGGTCACAGGACTCGAACGCGGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCAGCGTTCATGAAGATCGCTTGGTGGAAGGCCGGAATAGTCCCGGTTGCGTACCGTAGGGTCCCGTGTGCGAAAAAAGGCGGCGTTCGATTCAGCTTCCAAGGAAATGGGTATTGGCTATTGGTGTACGTGATGAACGTAGGCGGCGGCGGCGATGTGTACTCAATGGCGGTGAAAGGAAGCAAAACGGGGTGGATAACAATGAGCCATAACTGGGGAGCTTCATACCAAGCTTTTTCATCATTGGGTGGCCAAGGCCTCTCTTTCAGAATCACTTCCTACACAACAAGAGAGACCCTTACTTTATGGAATGTCATACCTTCAAATTGGCAAGTTGGGTTGACTTATAATACCAATTTCAACTTCCGTTGA 777 50.58 MASSLGFNFFFLPLVFAIFTRPTLAVFRPSPWKLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVKYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVAYRRVPCAKKGGVRFSFQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNTNFNFR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8423647 8424814 + Carg16671-RA Car15g01071 162908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g01071 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Car15g01071 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Car15g01071 258 Pfam Lytic transglycolase 67 153 IPR009009 -
Car15g01071 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g00649 Car15g01071 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01071 Car-Chr15:8423647 Car04g00193 Car-Chr4:1056885 3.60E-93 dispersed
Car15g01071 Car-Chr15:8423647 Car06g00649 Car-Chr6:3892111 6.52E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g01071 - - csv:101221231 513.842